From slides to AI-ready maps: Standardized multi-layer tissue maps as metadata for artificial intelligence in digital pathology.

Peter Regitnig

Gernot Fiala Markus Plass Robert Harb Peter Regitnig Kristijan Skok Wael Al Zoughbi Carmen Zerner Paul R. Torke Michaela Kargl Heimo Müller Tomás Brázdil Matej Gallo Jaroslav Kubín Roman Stoklasa Rudolf Nenutil Norman Zerbe Andreas Holzinger Petr Holub From slides to AI-ready maps: Standardized multi-layer tissue maps as metadata for artificial intelligence in digital pathology. 2026 103368 174 Artif. Intell. Medicine https://doi.org/10.1016/j.artmed.2026.103368 db/journals/artmed/artmed174.html#FialaPHRSZZTKMBGKSNZHH26 streams/journals/artmed

Gernot Fiala Markus Plass Robert Harb Peter Regitnig Kristijan Skok Wael Al Zoughbi Carmen Zerner Paul R. Torke Michaela Kargl Heimo Müller Tomás Brázdil Matej Gallo Jaroslav Kubín Roman Stoklasa Rudolf Nenutil Norman Zerbe Andreas Holzinger Petr Holub Standardized Multi-Layer Tissue Maps for Enhanced Artificial Intelligence Integration and Search in Large-Scale Whole Slide Image Archives. 2025 August abs/2508.21418 CoRR https://doi.org/10.48550/arXiv.2508.21418 db/journals/corr/corr2508.html#abs-2508-21418 streams/journals/corr

Andreas Holzinger Michaela Kargl Bettina Kipperer Peter Regitnig Markus Plass Heimo Müller Personas for Artificial Intelligence (AI) an Open Source Toolbox. 23732-23747 2022 10 IEEE Access https://doi.org/10.1109/ACCESS.2022.3154776 https://www.wikidata.org/entity/Q114989369 db/journals/access/access10.html#HolzingerKKRPM22

Ellery Wulczyn David F. Steiner Melissa Moran Markus Plass Robert Reihs Fraser Tan Isabelle Flament-Auvigne Trissia Brown Peter Regitnig Po-Hsuan Cameron Chen Narayan Hegde Apaar Sadhwani Robert MacDonald Benny Ayalew Gregory S. Corrado Lily H. Peng Daniel Tse Heimo Müller Zhaoyang Xu Yun Liu 0013 Martin C. Stumpe Kurt Zatloukal Craig H. Mermel Interpretable survival prediction for colorectal cancer using deep learning. 2021 4 npj Digit. Medicine https://doi.org/10.1038/s41746-021-00427-2 db/journals/npjdm/npjdm4.html#WulczynSMPRTFBR21

Heimo Müller Peter Regitnig Peter Ferschin Anna Saranti Andreas Holzinger Classification and Visualization of Patterns in Medical Images. 639-643 2020 IV https://doi.org/10.1109/IV51561.2020.00110 conf/iv/2020 db/conf/iv/iv2020.html#MullerRFSH20 Peter Regitnig Heimo Müller Andreas Holzinger Expectations of Artificial Intelligence for Pathology. 1-15 2020 AI and ML for Digital Pathology https://doi.org/10.1007/978-3-030-50402-1_1 db/series/lncs/lncs12090.html#RegitnigMH20 Michaela Kargl Peter Regitnig Heimo Müller Andreas Holzinger Towards a Better Understanding of the Workflows: Modeling Pathology Processes in View of Future AI Integration. 102-117 2020 AI and ML for Digital Pathology https://doi.org/10.1007/978-3-030-50402-1_7 db/series/lncs/lncs12090.html#KarglRMH20

Ellery Wulczyn David F. Steiner Melissa Moran Markus Plass Robert Reihs Fraser Tan Isabelle Flament-Auvigne Trissia Brown Peter Regitnig Po-Hsuan Cameron Chen Narayan Hegde Apaar Sadhwani Robert MacDonald Benny Ayalew Gregory S. Corrado Lily H. Peng Daniel Tse Heimo Müller Zhaoyang Xu Yun Liu 0013 Martin C. Stumpe Kurt Zatloukal Craig H. Mermel Interpretable Survival Prediction for Colorectal Cancer using Deep Learning. 2020 abs/2011.08965 CoRR https://arxiv.org/abs/2011.08965 db/journals/corr/corr2011.html#abs-2011-08965

Ellery Wulczyn Kunal Nagpal Matthew Symonds Melissa Moran Markus Plass Robert Reihs Farah Nader Fraser Tan Yuannan Cai Trissia Brown Isabelle Flament-Auvigne Mahul B. Amin Martin C. Stumpe Heimo Müller Peter Regitnig Andreas Holzinger Gregory S. Corrado Lily H. Peng Po-Hsuan Cameron Chen David F. Steiner Kurt Zatloukal Yun Liu 0013 Craig H. Mermel Predicting Prostate Cancer-Specific Mortality with A.I.-based Gleason Grading. 2020 abs/2012.05197 CoRR https://arxiv.org/abs/2012.05197 db/journals/corr/corr2012.html#abs-2012-05197

Herwig Erich Rehatschek Ariane Aigelsreiter Peter Regitnig Barbara Kirnbauer Introduction of eLectures at the Medical University of Graz - Results and Experiences from a Pilot Trial. 29-36 2013 8 S1 Int. J. Emerg. Technol. Learn. https://doi.org/10.3991/ijet.v8is1.2330 db/journals/ijet/ijet8.html#RehatschekARK13

M. Auer Peter Regitnig Rudolf Stollberger Franz Ebner Gerhard A. Holzapfel A methodology to study the morphologic changes in lesions during in vitro angioplasty using MRI and image processing. 163-173 2008 12 Medical Image Anal. 2 https://doi.org/10.1016/j.media.2007.09.001 https://www.wikidata.org/entity/Q50869580 db/journals/mia/mia12.html#AuerRSEH08

M. Auer Rudolf Stollberger Peter Regitnig Franz Ebner Gerhard A. Holzapfel 3-D reconstruction of tissue components for atherosclerotic human arteries using ex vivo high-resolution MRI. 345-357 2006 25 IEEE Trans. Medical Imaging 3 https://doi.org/10.1109/TMI.2006.870485 https://www.wikidata.org/entity/Q51947259 db/journals/tmi/tmi25.html#AuerSREH06

M. Auer Peter Regitnig Gerhard A. Holzapfel An automatic nonrigid registration for stained histological sections. 475-486 2005 14 IEEE Trans. Image Process. 4 https://doi.org/10.1109/TIP.2005.843756 https://www.wikidata.org/entity/Q51976354 db/journals/tip/tip14.html#AuerRH05

Pierre Elbischger Horst Bischof Peter Regitnig Gerhard A. Holzapfel Automatic analysis of collagen fiber orientation in the outermost layer of human arteries. 269-284 2004 7 Pattern Anal. Appl. 3 https://doi.org/10.1007/s10044-004-0224-3 db/journals/paa/paa7.html#ElbischgerBRH04

Christian Schulze-Bauer M. Auer Rudolf Stollberger Peter Regitnig Milan Sonka Gerhard A. Holzapfel Assessment of plaque stability by means of high-resolution MRI and finite element analyses of local stresses and strains. 449-452 2002 conf/isbi/2002 ISBI https://doi.org/10.1109/ISBI.2002.1029291 db/conf/isbi/isbi2002.html#Schulze-BauerASRSH02 Ariane Aigelsreiter Mahul B. Amin M. Auer Benny Ayalew Horst Bischof Tomás Brázdil Trissia Brown Yuannan Cai Po-Hsuan Cameron Chen Gregory S. Corrado Franz Ebner Pierre Elbischger Peter Ferschin Gernot Fiala Isabelle Flament-Auvigne Matej Gallo Robert Harb Narayan Hegde Petr Holub Gerhard A. Holzapfel Andreas Holzinger Michaela Kargl Bettina Kipperer Barbara Kirnbauer Jaroslav Kubín Yun Liu 0013 Robert MacDonald Craig H. Mermel Melissa Moran Heimo Müller Farah Nader Kunal Nagpal Rudolf Nenutil Lily PengLily H. Peng Markus Plass Herwig Erich Rehatschek Robert Reihs Apaar Sadhwani Anna Saranti Christian Schulze-Bauer Kristijan Skok Milan Sonka David F. Steiner Roman Stoklasa Rudolf Stollberger Martin C. Stumpe Matthew Symonds Fraser Tan Paul R. Torke Daniel Tse Ellery Wulczyn Zhaoyang Xu Kurt Zatloukal Norman Zerbe Carmen Zerner Wael Al Zoughbi