Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text.

Vijaykumar Holla

Safa Fathiamini Amber M. Johnson Jia Zeng Vijaykumar Holla Nora S. Sanchez Funda Meric-Bernstam Elmer V. Bernstam Trevor Cohen Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text. 2019 90 J. Biomed. Informatics https://doi.org/10.1016/j.jbi.2019.103094 https://www.wikidata.org/entity/Q90923321 db/journals/jbi/jbi90.html#FathiaminiJZHSM19

Jun Xu 0007 Hee-Jin Lee Jia Zeng Yonghui Wu 0001 Yaoyun Zhang Liang-Chin Huang Amber M. Johnson Vijaykumar Holla Ann M. Bailey Trevor Cohen Funda Meric-Bernstam Elmer V. Bernstam Hua Xu 0001 Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov. 750-757 2016 23 J. Am. Medical Informatics Assoc. 4 https://doi.org/10.1093/jamia/ocw009 https://www.wikidata.org/entity/Q37051425 db/journals/jamia/jamia23.html#0007LZWZHJHBCMB16

Safa Fathiamini Amber M. Johnson Jia Zeng Alejandro Araya Vijaykumar Holla Ann M. Bailey Beate Litzenburger Nora S. Sanchez Yekaterina Khotskaya Hua Xu 0001 Funda Meric-Bernstam Elmer V. Bernstam Trevor Cohen Automated identification of molecular effects of drugs (AIMED). 758-765 2016 23 J. Am. Medical Informatics Assoc. 4 https://doi.org/10.1093/jamia/ocw030 https://www.wikidata.org/entity/Q37051436 db/journals/jamia/jamia23.html#FathiaminiJZAHB16

Guocai Chen Jieyi Zhao Trevor Cohen Cui Tao Jingchun Sun Hua Xu 0001 Elmer V. Bernstam Andrew Lawson Jia Zeng Amber M. Johnson Vijaykumar Holla Ann M. Bailey Humberto Lara-Guerra Beate Litzenburger Funda Meric-Bernstam W. Jim Zheng Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature. 2015 2015 Database J. Biol. Databases Curation https://doi.org/10.1093/database/bav034 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390608/ https://www.wikidata.org/entity/Q28649991 db/journals/biodb/biodb2015.html#ChenZCTSXBLZJHB15

Safa Fathiamini Amber M. Johnson Vijaykumar Holla Ann M. Bailey Jia Zeng Lauren Brusco Funda Meric-Bernstam Elmer V. Bernstam Trevor Cohen Exploring the Use of SemRep Predications to Help Identify Secondary Drug Targets for Personalized Cancer Therapy. 2014 AMIA https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-314-1.1544729/a-315-1.1544726 conf/amia/2014 db/conf/amia/amia2014.html#FathiaminiJHBZB14 Guocai Chen Jieyi Zhao Trevor Cohen Cui Tao Jingchun Sun Hua Xu 0001 Elmer V. Bernstam Jia Zeng Amber M. Johnson Vijaykumar Holla Ann Balley Funda Meric-Bernstam W. Jim Zheng Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature. 66 2014 ICBO https://ceur-ws.org/Vol-1327/icbo2014_paper_22.pdf conf/icbo/2014 db/conf/icbo/icbo2014.html#ChenZCTSXBZJHBM14 Alejandro Araya Ann M. Bailey Ann Balley Elmer V. Bernstam Lauren Brusco Guocai Chen Trevor Cohen Safa Fathiamini Liang-Chin Huang Amber M. Johnson Yekaterina Khotskaya Humberto Lara-Guerra Andrew Lawson Hee-Jin Lee Beate Litzenburger Funda Meric-Bernstam Nora S. Sanchez Jingchun Sun Cui Tao Yonghui Wu 0001 Hua Xu 0001 Jun Xu 0007 Jia Zeng Yaoyun Zhang Jieyi Zhao W. Jim Zheng