AVPpred-BWR: antiviral peptides prediction via biological words representation.

Youyi Song

Zhuoyu Wei Yongqi Shen Xiang Tang Jian Wen Youyi Song Mingqiang Wei Jing Cheng Xiaolei Zhu 0001 AVPpred-BWR: antiviral peptides prediction via biological words representation. 2025 41 Bioinform. 4 https://doi.org/10.1093/bioinformatics/btaf126 db/journals/bioinformatics/bioinformatics41.html#WeiSTWSWCZ25 streams/journals/bioinformatics

Heng Zhang Zhizhe Lin Hai Xie Jinglin Zhou Youyi Song Teng Zhou Two-way heterogeneity model for dynamic spatiotemporal traffic flow prediction. 113635 2025 320 Knowl. Based Syst. https://doi.org/10.1016/j.knosys.2025.113635 db/journals/kbs/kbs320.html#ZhangLXZSZ25 streams/journals/kbs

Yu Ren Youyi Song Mingzhu Li Liangge He Chunlun Xiao Peng Yang 0011 Yongtao Zhang Cheng Zhao 0003 Tianfu Wang 0001 Guangqian Zhou Baiying Lei An object detection-based model for automated screening of stem-cells senescence during drug screening. 106940 2025 183 Neural Networks https://doi.org/10.1016/j.neunet.2024.106940 db/journals/nn/nn183.html#RenSLHXYZZWZL25 streams/journals/nn

Youyi Song Yuanlin Liu Zhizhe Lin Jinglin Zhou Duo Li Teng Zhou Man-Fai Leung Learning From AI-Generated Annotations for Medical Image Segmentation. 1473-1481 2025 February 71 IEEE Trans. Consumer Electron. 1 https://doi.org/10.1109/TCE.2024.3474037 db/journals/tce/tce71.html#SongLLZLZL25 streams/journals/tce

Yuanlin Liu Zhihan Zhou 0007 Mingqiang Wei Youyi Song Cost-Effective Active Labeling for Data-Efficient Cervical Cell Classification. 2025 August abs/2508.11340 CoRR https://doi.org/10.48550/arXiv.2508.11340 db/journals/corr/corr2508.html#abs-2508-11340 streams/journals/corr

Youyi Song Ao Zhang Jinglin Zhou Yu Luo 0004 Zhizhe Lin Teng Zhou Overlapping cytoplasms segmentation via constrained multi-shape evolution for cervical cancer screening. 102756 2024 148 Artif. Intell. Medicine https://doi.org/10.1016/j.artmed.2023.102756 db/journals/artmed/artmed148.html#SongZZLLZ24

Jing Zou Youyi Song Lihao Liu Angelica I. Avilés-Rivero Jing Qin 0001 Unsupervised lung CT image registration via stochastic decomposition of deformation fields. 102397 2024 115 Comput. Medical Imaging Graph. https://doi.org/10.1016/j.compmedimag.2024.102397 db/journals/cmig/cmig115.html#ZouSLAQ24

Youyi Song Jing Zou Kup-Sze Choi Baiying Lei Jing Qin 0001 Cell classification with worse-case boosting for intelligent cervical cancer screening. 103014 2024 January 91 Medical Image Anal. https://doi.org/10.1016/j.media.2023.103014 db/journals/mia/mia91.html#SongZCLQ24

Guanru Tan Teng Zhou Boyu Huang Haowen Dou Youyi Song Zhizhe Lin A noise-immune and attention-based multi-modal framework for short-term traffic flow forecasting. 4775-4790 2024 March 28 Soft Comput. 6 https://doi.org/10.1007/s00500-023-09173-x db/journals/soco/soco28.html#TanZHDSL24

Kang Wang 0004 Yingkui Zhang Youyi Song Jinghua Xu Shuyou Zhang 0001 Jianrong Tan Deep Pattern Matching for Energy Consumption Prediction of Complex Structures in Ecological Additive Manufacturing. 3510-3520 2024 March 20 IEEE Trans. Ind. Informatics 3 https://doi.org/10.1109/TII.2023.3281649 db/journals/tii/tii20.html#WangZSXZT24

Tianhong Quan Ye Yuan Yu Luo 0004 Youyi Song Teng Zhou Jiaqi Wang 0007 From Regression to Classification: Fuzzy Multikernel Subspace Learning for Robust Prediction and Drug Screening. 4137-4148 2024 March 20 IEEE Trans. Ind. Informatics 3 https://doi.org/10.1109/TII.2023.3321332 db/journals/tii/tii20.html#QuanYLSZW24

Guanghui Yue 0001 Peishan Wei Tianwei Zhou Youyi Song Cheng Zhao 0003 Tianfu Wang 0001 Baiying Lei Specificity-Aware Federated Learning With Dynamic Feature Fusion Network for Imbalanced Medical Image Classification. 6373-6383 2024 November 28 IEEE J. Biomed. Health Informatics 11 https://doi.org/10.1109/JBHI.2023.3319516 db/journals/titb/titb28.html#YueWZSZWL24 streams/journals/titb

Youyi Song Jeremy Yuen-Chun Teoh Kup-Sze Choi Jing Qin 0001 Dynamic Loss Weighting for Multiorgan Segmentation in Medical Images. 10651-10662 2024 August 35 IEEE Trans. Neural Networks Learn. Syst. 8 https://doi.org/10.1109/TNNLS.2023.3243241 db/journals/tnn/tnn35.html#SongTCQ24 streams/journals/tnn

Li Li Youyi Song Xiang Dong Peng Yang 0011 Tianfu Wang 0001 Baiying Lei Misclassification Detection via Counterexample Learning for Trustworthy Cervical Cancer Screening. 187-200 2024 PRCV (11) https://doi.org/10.1007/978-981-97-8795-1_13 conf/prcv/2024-11 db/conf/prcv/prcv2024-11.html#LiSDYWL24 streams/conf/prcv

Huaying Li Shumin Yang Youyi Song Yu Luo 0004 Junchao Li Teng Zhou Spatial dynamic graph convolutional network for traffic flow forecasting. 14986-14998 2023 June 53 Appl. Intell. 12 https://doi.org/10.1007/s10489-022-04271-z db/journals/apin/apin53.html#LiYSLLZ23

Boyu Huang Youyi Song Zhihan Cui Haowen Dou Dazhi Jiang Teng Zhou Jing Qin 0001 Gravitational search algorithm-extreme learning machine for COVID-19 active cases forecasting. 554-565 2023 August 17 IET Softw. 4 https://doi.org/10.1049/sfw2.12139 db/journals/iet-sen/iet-sen17.html#HuangSCDJZQ23

Weiwei Fang Wenhao Zhuo Youyi Song Jingwen Yan Teng Zhou Jing Qin 0001 Δfree-LSTM: An error distribution free deep learning for short-term traffic flow forecasting. 180-190 2023 March 526 Neurocomputing https://doi.org/10.1016/j.neucom.2023.01.009 db/journals/ijon/ijon526.html#FangZSYZQ23

Youyi Song Lequan Yu Baiying Lei Kup-Sze Choi Jing Qin 0001 Data Discernment for Affordable Training in Medical Image Segmentation. 1431-1445 2023 May 42 IEEE Trans. Medical Imaging 5 https://doi.org/10.1109/TMI.2022.3228316 db/journals/tmi/tmi42.html#SongYLCQ23

Huisi Wu Canfeng Lin Jiasheng Liu Youyi Song Zhenkun Wen Jing Qin 0001 Feature Masking on Non-Overlapping Regions for Detecting Dense Cells in Blood Smear Image. 1668-1680 2023 June 42 IEEE Trans. Medical Imaging 6 https://doi.org/10.1109/TMI.2023.3234688 db/journals/tmi/tmi42.html#WuLLSWQ23

Boyu Huang Guanru Tan Haowen Dou Zhihan Cui Youyi Song Teng Zhou Mutual gain adaptive network for segmenting brain stroke lesions. 109568 2022 129 Appl. Soft Comput. https://doi.org/10.1016/j.asoc.2022.109568 https://www.wikidata.org/entity/Q114677350 db/journals/asc/asc129.html#HuangTDCSZ22

Teng Zhou Haowen Dou Jie Tan Youyi Song Fei Wang 0056 Jiaqi Wang 0007 Small dataset solves big problem: An outlier-insensitive binary classifier for inhibitory potency prediction. 109242 2022 251 Knowl. Based Syst. https://doi.org/10.1016/j.knosys.2022.109242 db/journals/kbs/kbs251.html#ZhouDTSWW22

Ye Yuan Tianhong Quan Youyi Song Jitian Guan Teng Zhou Renhua Wu Noise-Immune Extreme Ensemble Learning for Early Diagnosis of Neuropsychiatric Systemic Lupus Erythematosus. 3495-3506 2022 26 IEEE J. Biomed. Health Informatics 7 https://doi.org/10.1109/JBHI.2022.3164937 https://www.wikidata.org/entity/Q114894848 db/journals/titb/titb26.html#YuanQSGZW22

Huisi Wu Zhaoze Wang Youyi Song Lin Yang Jing Qin 0001 Cross-patch Dense Contrastive Learning for Semi-supervised Segmentation of Cellular Nuclei in Histopathologic Images. 11656-11665 2022 CVPR https://doi.org/10.1109/CVPR52688.2022.01137 conf/cvpr/2022 db/conf/cvpr/cvpr2022.html#WuWSY022 Wei Wang Yu Luo 0004 Jie Ling 0002 Youyi Song Teng Zhou C<sup>3</sup>Net: A Cross-Channel Cross-Scale and Cross-Stage Network for Single Image Super-Resolution. 1-6 2022 ICME https://doi.org/10.1109/ICME52920.2022.9859958 conf/icmcs/2022 db/conf/icmcs/icme2022.html#WangLLSZ22 Tianhong Quan Ye Yuan Youyi Song Teng Zhou Jing Qin 0001 Fuzzy Structural Broad Learning for Breast Cancer Classification. 1-4 2022 ISBI https://doi.org/10.1109/ISBI52829.2022.9761496 conf/isbi/2022 db/conf/isbi/isbi2022.html#QuanYSZQ22 Jing Zou Lihao Liu Youyi Song Kup-Sze Choi Jing Qin 0001 Deformable Lung CT Registration by Decomposing Large Deformation. 185-189 2022 WBIR https://doi.org/10.1007/978-3-031-11203-4_20 conf/wbir/2022 db/conf/wbir/wbir2022.html#ZouLSCQ22

Shiqiang Zheng Shuangyi Zhang Youyi Song Zhizhe Lin Dazhi Jiang Teng Zhou A Noise-Immune Boosting Framework for Short-Term Traffic Flow Forecasting. 5582974:1-5582974:9 2021 2021 Complex. https://doi.org/10.1155/2021/5582974 db/journals/complexity/complexity2021.html#ZhengZSLJZ21

Huakang Lu Zuhao Ge Youyi Song Dazhi Jiang Teng Zhou Jing Qin 0001 A temporal-aware LSTM enhanced by loss-switch mechanism for traffic flow forecasting. 169-178 2021 427 Neurocomputing https://doi.org/10.1016/j.neucom.2020.11.026 db/journals/ijon/ijon427.html#LuGSJZQ21

Zuhao Ge Yuhui Li Cheng Liang Youyi Song Teng Zhou Jing Qin 0001 Acsnet: Adaptive Cross-Scale Network with Feature Maps Refusion for Vehicle Density Detection. 1-6 2021 ICME https://doi.org/10.1109/ICME51207.2021.9428454 conf/icmcs/2021 db/conf/icmcs/icme2021.html#GeLLSZ021 Youyi Song Lequan Yu Baiying Lei Kup-Sze Choi Jing Qin 0001 Selective Learning from External Data for CT Image Segmentation. 420-430 2021 MICCAI (1) https://doi.org/10.1007/978-3-030-87193-2_40 conf/miccai/2021-1 db/conf/miccai/miccai2021-1.html#SongYLCQ21

Weihong Cai Junjie Yang 0007 Yidan Yu Youyi Song Teng Zhou Jing Qin 0001 PSO-ELM: A Hybrid Learning Model for Short-Term Traffic Flow Forecasting. 6505-6514 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2019.2963784 db/journals/access/access8.html#CaiYYSZQ20

Lingru Cai Yidan Yu Shuangyi Zhang Youyi Song Zhi Xiong 0001 Teng Zhou A Sample-Rebalanced Outlier-Rejected k-Nearest Neighbor Regression Model for Short-Term Traffic Flow Forecasting. 22686-22696 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2020.2970250 db/journals/access/access8.html#CaiYZSXZ20

Jiajun Wang Zixin Xie Yan Li 0064 Youyi Song Jingwen Yan Weihua Bai Teng Zhou Jing Qin 0001 Relationship Between Health Status and Physical Fitness of College Students From South China: An Empirical Study by Data Mining Approach. 67466-67473 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2020.2986039 db/journals/access/access8.html#WangXLSYBZQ20

Dazhi Jiang Dongmin Huang Youyi Song Kaichao Wu Huakang Lu Quanquan Liu 0002 Teng Zhou An Audio Data Representation for Traffic Acoustic Scene Recognition. 177863-177873 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2020.3027474 db/journals/access/access8.html#JiangHSWLLZ20

Youyi Song Zhen Yu Teng Zhou Jeremy Yuen-Chun Teoh Baiying Lei Kup-Sze Choi Jing Qin 0001 CNN in CT Image Segmentation: Beyond Loss Function for Exploiting Ground Truth Images. 325-328 2020 ISBI https://doi.org/10.1109/ISBI45749.2020.9098488 conf/isbi/2020 db/conf/isbi/isbi2020.html#SongYZTLC020 Youyi Song Zhen Yu Teng Zhou Jeremy Yuen-Chun Teoh Baiying Lei Kup-Sze Choi Jing Qin 0001 Learning 3D Features with 2D CNNs via Surface Projection for CT Volume Segmentation. 176-186 2020 MICCAI (4) https://doi.org/10.1007/978-3-030-59719-1_18 conf/miccai/2020-4 db/conf/miccai/miccai2020-4.html#SongYZTLCQ20 Youyi Song Teng Zhou Jeremy Yuen-Chun Teoh Jing Zhang 0051 Jing Qin 0001 Unsupervised Learning for CT Image Segmentation via Adversarial Redrawing. 309-320 2020 MICCAI (4) https://doi.org/10.1007/978-3-030-59719-1_31 conf/miccai/2020-4 db/conf/miccai/miccai2020-4.html#SongZTZQ20 Youyi Song Lei Zhu 0003 Baiying Lei Bin Sheng 0001 Qi Dou 0001 Jing Qin 0001 Kup-Sze Choi Shape Mask Generator: Learning to Refine Shape Priors for Segmenting Overlapping Cervical Cytoplasms. 639-649 2020 MICCAI (4) https://doi.org/10.1007/978-3-030-59719-1_62 conf/miccai/2020-4 db/conf/miccai/miccai2020-4.html#SongZLSDQC20

Youyi Song Zhen Yu Teng Zhou Jeremy Yuen-Chun Teoh Baiying Lei Kup-Sze Choi Jing Qin 0001 CNN in CT Image Segmentation: Beyound Loss Function for Expoliting Ground Truth Images. 2020 abs/2004.03882 CoRR https://arxiv.org/abs/2004.03882 db/journals/corr/corr2004.html#abs-2004-03882

Youyi Song Lei Zhu 0003 Baiying Lei Bin Sheng 0001 Qi Dou 0001 Jing Qin 0001 Kup-Sze Choi Constrained Multi-shape Evolution for Overlapping Cytoplasm Segmentation. 2020 abs/2004.03892 CoRR https://arxiv.org/abs/2004.03892 db/journals/corr/corr2004.html#abs-2004-03892

Youyi Song Ee-Leng Tan Xudong Jiang 0001 Jie-Zhi Cheng Baiying Lei Tianfu Wang 0001 Corrections to "Accurate Cervical Cell Segmentation From Overlapping Clumps in Pap Smear Images". 1543 2019 38 IEEE Trans. Medical Imaging 6 https://doi.org/10.1109/TMI.2019.2913056 https://www.wikidata.org/entity/Q92746261 db/journals/tmi/tmi38.html#SongTJCLW19

Youyi Song Lei Zhu 0003 Jing Qin 0001 Baiying Lei Bin Sheng 0001 Kup-Sze Choi Segmentation of Overlapping Cytoplasm in Cervical Smear Images via Adaptive Shape Priors Extracted From Contour Fragments. 2849-2862 2019 38 IEEE Trans. Medical Imaging 12 https://doi.org/10.1109/TMI.2019.2915633 https://www.wikidata.org/entity/Q91882233 db/journals/tmi/tmi38.html#SongZQLSC19

Youyi Song Jing Qin 0001 Baiying Lei Shengfeng He Kup-Sze Choi JOint Shape Matching for Overlapping Cytoplasm Segmentation in Cervical Smear Images. 191-194 2019 ISBI https://doi.org/10.1109/ISBI.2019.8759259 conf/isbi/2019 db/conf/isbi/isbi2019.html#Song0LHC19 Shuangyi Zhang Youyi Song Dazhi Jiang Teng Zhou Jing Qin 0001 Noise-Identified Kalman Filter for Short-Term Traffic Flow Forecasting. 462-466 2019 MSN https://doi.org/10.1109/MSN48538.2019.00093 conf/msn/2019 db/conf/msn/msn2019.html#ZhangSJZ019 Youyi Song Jing Qin 0001 Baiying Lei Kup-Sze Choi Automated Segmentation of Overlapping Cytoplasm in Cervical Smear Images via Contour Fragments. 2018 AAAI https://doi.org/10.1609/aaai.v32i1.11293 conf/aaai/2018 db/conf/aaai/aaai2018.html#SongQLC18 168-175

Youyi Song Liang He Feng Zhou 0003 Siping Chen Dong Ni 0001 Bai Ying Lei Tianfu Wang 0001 Segmentation, Splitting, and Classification of Overlapping Bacteria in Microscope Images for Automatic Bacterial Vaginosis Diagnosis. 1095-1104 2017 21 IEEE J. Biomed. Health Informatics 4 https://doi.org/10.1109/JBHI.2016.2594239 https://www.wikidata.org/entity/Q36091878 db/journals/titb/titb21.html#SongHZCNLW17

Youyi Song Ee-Leng Tan Xudong Jiang 0001 Jie-Zhi Cheng Dong Ni 0001 Siping Chen Bai Ying Lei Tianfu Wang 0001 Accurate Cervical Cell Segmentation from Overlapping Clumps in Pap Smear Images. 288-300 2017 36 IEEE Trans. Medical Imaging 1 https://doi.org/10.1109/TMI.2016.2606380 https://www.wikidata.org/entity/Q50488325 db/journals/tmi/tmi36.html#SongTJCNCLW17

Youyi Song Jie-Zhi Cheng Dong Ni 0001 Siping Chen Bai Ying Lei Tianfu Wang 0001 Segmenting overlapping cervical cell in Pap smear images. 1159-1162 2016 ISBI https://doi.org/10.1109/ISBI.2016.7493472 conf/isbi/2016 db/conf/isbi/isbi2016.html#SongCNCLW16

Youyi Song Ling Zhang 0002 Siping Chen Dong Ni 0001 Bai Ying Lei Tianfu Wang 0001 Accurate Segmentation of Cervical Cytoplasm and Nuclei Based on Multiscale Convolutional Network and Graph Partitioning. 2421-2433 2015 62 IEEE Trans. Biomed. Eng. 10 https://doi.org/10.1109/TBME.2015.2430895 https://www.wikidata.org/entity/Q50587321 db/journals/tbe/tbe62.html#SongZCNLW15

Youyi Song Ling Zhang 0002 Siping Chen Dong Ni 0001 Baopu Li Yongjing Zhou Baiying Lei Tianfu Wang 0001 A deep learning based framework for accurate segmentation of cervical cytoplasm and nuclei. 2903-2906 2014 EMBC https://doi.org/10.1109/EMBC.2014.6944230 https://www.wikidata.org/entity/Q50608913 conf/embc/2014 db/conf/embc/embc2014.html#SongZCNLZLW14 Youyi Song Dong Ni 0001 Liang He Siping Chen Bai Ying Lei Tianfu Wang 0001 Segmentation and Splitting of Touching Vaginal Bacteria Based on Superpixel and Effective Distance. 976-981 2014 ICDM Workshops https://doi.org/10.1109/ICDMW.2014.172 https://doi.ieeecomputersociety.org/10.1109/ICDMW.2014.172 conf/icdm/2014w db/conf/icdm/icdm2014w.html#SongNHCLW14 Angelica I. Avilés-Rivero Weihua Bai Lingru Cai Weihong Cai Siping Chen Jie-Zhi Cheng Jing Cheng Kup-Sze Choi Zhihan Cui Xiang Dong Haowen Dou Qi Dou 0001 Weiwei Fang Zuhao Ge Jitian Guan Liang He Liangge He Shengfeng He Boyu Huang Dongmin Huang Dazhi Jiang Xudong Jiang 0001 Bai Ying LeiBaiying Lei Man-Fai Leung Baopu Li Duo Li Huaying Li Junchao Li Li Li Mingzhu Li Yan Li 0064 Yuhui Li Cheng Liang Canfeng Lin Zhizhe Lin Jie Ling 0002 Jiasheng Liu Lihao Liu Quanquan Liu 0002 Yuanlin Liu Huakang Lu Yu Luo 0004 Dong Ni 0001 Harry QinJing Qin 0001 Tianhong Quan Yu Ren Yongqi Shen Bin Sheng 0001 Ee-Leng Tan Guanru Tan Jianrong Tan Jie Tan Xiang Tang Jeremy Yuen-Chun Teoh Fei Wang 0056 Jiajun Wang Jiaqi Wang 0007 Kang Wang 0004 Tianfu Wang 0001 Wei Wang Zhaoze Wang Mingqiang Wei Peishan Wei Zhuoyu Wei Jian Wen Zhenkun Wen Huisi Wu Kaichao Wu Renhua Wu Chunlun Xiao Hai Xie Zixin Xie Zhi Xiong 0001 Jinghua Xu Jingwen Yan Junjie Yang 0007 Lin Yang Peng Yang 0011 Shumin Yang Lequan Yu Yidan Yu Zhen Yu Ye Yuan Guanghui Yue 0001 Ao Zhang Heng Zhang Jing Zhang 0051 Ling Zhang 0002 Shuangyi Zhang Shuyou Zhang 0001 Yingkui Zhang Yongtao Zhang Cheng Zhao 0003 Shiqiang Zheng Feng Zhou 0003 Guangqian Zhou Jinglin Zhou Teng Zhou Tianwei Zhou Yongjing Zhou Zhihan Zhou 0007 Lei Zhu 0003 Xiaolei Zhu 0001 Wenhao Zhuo Jing Zou