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ORCIDVenkataramana Gadhamshetty
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2020 – today
- 2025
[c30]Alain Bertrand Bomgni, Junior Basile Fofack, Shiva Aryal, Jerry Lonlac Konlac, Venkataramana Gadhamshetty, Etienne T. Gnimpieba:
Minimal Features Subset Enabling Essential Gene Prediction Within and Between Organisms for Sulfate Reducing Bacteria Family. BIBM 2025: 7516-7525- [c29]Alain Bertrand Bomgni, Dilane Sagueu Wakam, Ribot Fleury Téné Ceskoutsé, Nick Klein, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim:
Dual-Level Bayesian Predictive Modeling of Biological Nitrogen Fixation: The Effect of TPE Bayesian Optimization on Stacked Model Performance. BIBM 2025: 7525-7531 - [c28]Alain Bertrand Bomgni, Feuzing Ntemma Donald, Shiva Aryal, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim:
Dimensional Reprojection and Sequential Modeling with Transformer Integration for Interesting Gene and Protein Recognition. BIBM 2025: 7532-7537 - [c27]Alain Bertrand Bomgni, Wilfried Loic Dnjomou Yonmba, Ribot Fleury Téné Ceskoutsé, Nick Klein, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim:
Heterogeneous Graph Network (HGN) for Binary Spatio-Chemical-Source Classification of Per- and Polyfluoroalkyl Substances (PFAS) Contamination: An Optimized Approach. BIBM 2025: 7538-7545 - [c26]Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
A Convergence Roadmap for AI-Enabled, Omics-Guided Living-Interface Engineering. A National Science Foundation (NSF) National Research Traineeship (NRT) Initiative. BIBM 2025: 7547-7552 - [c25]Isha Srikari Gadhamshetty, Jeanne Gnimpieba, Neha Sriveda Gadhamshetty, Shiva Aryal, Arun Kalaga, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Digital Twin COVID Tracker Using Wastewater Data: A Middle-School Led Study Within the U.S. NSF National Research Traineeship Program Framework. BIBM 2025: 7553-7557 - [c24]Grace Goeden, Tuyen Do, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Functional Biofilm-Associated Microbial Markers in a Colorectal Cancer Cohort: Evidence for Quorum Sensing, Exopolysaccharide Production, and Biofilm-Driven Pathogenesis. BIBM 2025: 7558-7562 - [c23]Bichar Dip Shrestha Gurung, Tuyen Do, Shiva Aryal, Naina Maharjan, Dikshya Bhandari, Bipul Bhattarai, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Digital Twin Forecasting of Quorum-Sensing Associated Biofilm Microorganisms in Urban Wastewater Over a 30-Week Interval. BIBM 2025: 7563-7565 - [c22]Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Toward Autonomous Biofilm Engineering: A Vision for a Digital Twin-Based Lab Automation. BIBM 2025: 7566-7573 - [c21]Somayeh Falahati Khanaman, Etienne Z. Gnimpieba, Mengistu Geza Nisrani, Venkataramana Gadhamshetty:
AI-Driven Sensor-Omics Framework for Detecting Antibiotic Resistance in Environmental Engineering Systems. BIBM 2025: 7574-7578 - [c20]Manish Rayamajhi, Shiva Aryal, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Computational Validation of AlphaFold 3 as a Design Engine for Next Generation Aptamer Therapeutics. BIBM 2025: 7579-7582 - [c19]Pawan Kumar Sapkota, Shiva Aryal, Bharat Jasthi, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Emerging Biofilm Marker with Thin-Film (CuO) Surface Engineering for Applications in Electrochemical Sensors. BIBM 2025: 7583-7585 - [c18]Caine K. Shagla, Manoj Tripathi, Bichar Dip Shrestha Gurung, Etienne Gnimpieba Zohim, Venkataramana Gadhamshetty:
A Physics-First, Physics-Gated AI Framework for Verifiable Biofilm Sensing. BIBM 2025: 7586-7588 - [c17]Tippabattini Jayaramudu, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty:
Development and OMICs Evaluation of Antibiofilm Material Using Hexanoic-Anhydride Modified Chitosan Electrospun Fibers Embedded with Silver Nanoparticles for Antibacterial Effects. BIBM 2025: 7589-7591 - [c16]Rupesh Kumar Yadav, Shiva Aryal, Bichar Dip Shrestha Gurung, Dikshya Bhandari, Graham Hartman, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Digital Biomonitoring of Microbial Communities: a Phenotype Feature-driven AutoML Framework for Bacteria Classification. BIBM 2025: 7592-7595 - 2024
- [j3]Etienne Z. Gnimpieba
, Timothy W. Hartman, Tuyen Do, Jessica Zylla, Shiva Aryal, Samuel J. Haas, Diing D. M. Agany, Bichar Dip Shrestha Gurung, Valena Doe, Zelaikha B. Yosufzai, Daniel Pan, Ross Campbell, Victor C. Huber, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Carol Lushbough:
Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. Briefings Bioinform. 25(Supplement 1) (2024) - [c15]Alain Bertrand Bomgni, Ribot Fleury Téné Ceskoutsé, Kevin Jordan Njike Njingang, Thomas Bouétou Bouétou, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim:
AIM-HKR: AI-Driven Molecular Retrosynthesis Using Heterogeneous Knowledge Representations. BIBM 2024: 6887-6892 - [c14]Md Hasanur Rahman, Bichar Dip Shrestha Gurung, Manoj Tripathi, Alan Dalton, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Enhancing Sulphate Reducing Bacteria Clustering by Implementing UMAP on Raman Spectroscopy Data. BIBM 2024: 6936-6938 - [i2]Shiva Aryal, Tuyen Do, Bisesh Heyojoo, Sandeep Chataut, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery. CoRR abs/2404.08511 (2024) - 2023
- [j2]Shankarachary Ragi, Md Hafizur Rahman, Jamison Duckworth, Kalimuthu Jawaharraj, Parvathi Chundi, Venkataramana Gadhamshetty:
Artificial Intelligence-Driven Image Analysis of Bacterial Cells and Biofilms. IEEE ACM Trans. Comput. Biol. Bioinform. 20(1): 174-184 (2023) - [c13]Alain Bertrand Bomgni, Dialo Abdala, Bichar Dip Shrestha Gurung, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. BIBM 2023: 4473-4479 - [c12]Alain Bertrand Bomgni, Claude Epiphanie Mbotchack Ngale, Shiva Aryal, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
NLPADADE: Leveraging Natural Language Processing for Automated Detection of Adverse Drug Effects. BIBM 2023: 4480-4487 - [c11]Vidya Bommanapally, Mahadevan Subramaniam, Suvarna Talluri, Venkataramana Gadhamshetty, Juneau Jones:
Self-Supervised Scribble-based Segmentation of Single Cells in Biofilms. BIBM 2023: 4488-4493 - [c10]Ramesh Devadig, Bichar Dip Shrestha Gurung, Etienne Z. Gnimpieba, Bharat Jasthi, Venkataramana Gadhamshetty:
Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach. BIBM 2023: 4494-4496 - [c9]Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba:
Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. BIBM 2023: 4497-4499 - [c8]Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. BIBM 2023: 4500-4502 - [c7]Md Hasanur Rahman, Vidya Bommanapally, Dilanga Abeyrathna, Md Ashaduzzman, Manoj Tripathi, Mahzuzah Zahan, Mahadevan Subramaniam, Venkataramana Gadhamshetty:
Machine Learning-Assisted Optical Detection of Multilayer Hexagonal Boron Nitride for Enhanced Characterization and Analysis. BIBM 2023: 4506-4508 - [i1]Md Hafizur Rahman, Md. Ali Azam, Md. Abir Hossen, Shankarachary Ragi, Venkataramana Gadhamshetty:
BiofilmScanner: A Computational Intelligence Approach to Obtain Bacterial Cell Morphological Attributes from Biofilm Image. CoRR abs/2302.09629 (2023) - 2022
- [j1]Adithi D. Chakravarthy, Dilanga Abeyrathna, Mahadevan Subramaniam, Parvathi Chundi, Venkataramana Gadhamshetty:
Semantic Image Segmentation Using Scant Pixel Annotations. Mach. Learn. Knowl. Extr. 4(3): 621-640 (2022) - [c6]Vidya Bommanapally, Md Ashaduzzman, Mahadevan Subramaniam, Suvarna Talluri, Venkataramana Gadhamshetty:
Leveraging Weak annotations for Deep learning tasks on Biofilm Images. BIBM 2022: 3599-3601 - [c5]Bichar Dip Shrestha Gurung, Ramesh Devadig, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. BIBM 2022: 3602-3604 - [c4]Sam Haas, Timothy W. Hartman, Bichar Dip Shrestha Gurung, Tuyen Do, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. BIBM 2022: 3605-3607 - 2021
- [c3]Ernest Basile Fotseu Fotseu, Thierry Kongne Nembot, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba, Alain Bertrand Bomgni:
GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition. BIBM 2021: 3562-3569 - [c2]William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi:
Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. BIBM 2021: 3570-3577 - 2020
- [c1]Adithi D. Chakravarthy, Parvathi Chundi, Mahadevan Subramaniam, Shankarachary Ragi, Venkataramana Gadhamshetty:
A Thrifty Annotation Generation Approach for Semantic Segmentation of Biofilms. BIBE 2020: 602-607
Coauthor Index
aka: Etienne Gnimpieba Zohim
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