Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline.

Sylvain Gouttard

Jiahui Wang Clement Vachet Ashley Rumple Sylvain Gouttard Clementine Ouziel Emilie Perrot Guangwei Du Xuemei Huang 0002 Guido Gerig Martin Andreas Styner Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline. 2014 8 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2014.00007 https://www.wikidata.org/entity/Q37558908 db/journals/fini/fini8.html#WangVRGOPDHGS14 7

Karen Grewen Margaret Burchinal Clement Vachet Sylvain Gouttard John H. Gilmore Weili Lin Josephine Johns Mala Elam Guido Gerig Prenatal cocaine effects on brain structure in early infancy. 114-123 2014 101 NeuroImage https://doi.org/10.1016/j.neuroimage.2014.06.070 https://www.wikidata.org/entity/Q34470996 db/journals/neuroimage/neuroimage101.html#GrewenBVGGLJEG14

Audrey R. Verde François Budin Jean-Baptiste Berger Aditya Gupta 0004 Mahshid Farzinfar Adrien Kaiser Mihye Ahn Hans J. Johnson Joy T. Matsui Heather Cody Hazlett Anuja Sharma Casey Goodlett Yundi Shi Sylvain Gouttard Clement Vachet Joseph Piven Hongtu Zhu Guido Gerig Martin Andreas Styner UNC-Utah NA-MIC framework for DTI fiber tract analysis. 2013 7 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2013.00051 https://www.wikidata.org/entity/Q41860688 db/journals/fini/fini7.html#VerdeBBGFKAJMHSGSGVPZGS14 51

Mahshid Farzinfar Ipek Oguz Rachel Gimpel Smith Audrey R. Verde Cheryl Dietrich Aditya Gupta 0004 Maria L. Escolar Joseph Piven Sonia Pujol Clement Vachet Sylvain Gouttard Guido Gerig Stephen Dager Robert C. McKinstry Sarah Paterson Alan C. Evans Martin Andreas Styner Diffusion imaging quality control via entropy of principal direction distribution. 1-12 2013 82 NeuroImage https://doi.org/10.1016/j.neuroimage.2013.05.022 https://www.wikidata.org/entity/Q41879803 db/journals/neuroimage/neuroimage82.html#FarzinfarOSVDGEPPVGGDMPES13

Audrey R. Verde Jean-Baptiste Berger Aditya Gupta 0004 Mahshid Farzinfar Adrien Kaiser Vicki W. Chanon Charlotte A. Boettiger Hans J. Johnson Joy T. Matsui Anuja Sharma Casey Goodlett Yundi Shi Hongtu Zhu Guido Gerig Sylvain Gouttard Clement Vachet Martin Styner UNC-Utah NA-MIC DTI framework: atlas based fiber tract analysis with application to a study of nicotine smoking addiction. 86692D 2013 Image Processing https://doi.org/10.1117/12.2007093 https://www.wikidata.org/entity/Q41763382 conf/miip/2013 db/conf/miip/miip2013.html#VerdeBGFKCBJMSG13

Xiujuan Geng Sylvain Gouttard Anuja Sharma Hongbin Gu Martin Styner Weili Lin Guido Gerig John H. Gilmore Quantitative tract-based white matter development from birth to age 2 years. 542-557 2012 61 NeuroImage 3 https://doi.org/10.1016/j.neuroimage.2012.03.057 https://www.wikidata.org/entity/Q35980896 db/journals/neuroimage/neuroimage61.html#GengGSGSLGG12

Avantika Vardhan Marcel Prastawa Sylvain Gouttard Joseph Piven Guido Gerig Quantifying regional growth patterns through longitudinal analysis of distances between multimodal MR intensity distributions. 1156-1159 2012 ISBI https://doi.org/10.1109/ISBI.2012.6235765 https://www.wikidata.org/entity/Q42135174 conf/isbi/2012 db/conf/isbi/isbi2012.html#VardhanPGPG12 Manasi Datar Prasanna Muralidharan Abhishek Kumar 0001 Sylvain Gouttard Joseph Piven Guido Gerig Ross T. Whitaker P. Thomas Fletcher Mixed-Effects Shape Models for Estimating Longitudinal Changes in Anatomy. 76-87 2012 STIA https://doi.org/10.1007/978-3-642-33555-6_7 https://www.wikidata.org/entity/Q57511475 conf/miccai/2012stia db/conf/miccai/stia2012.html#DatarMKGPGWF12 Sylvain Gouttard Casey Goodlett Marek Kubicki Guido Gerig Measures for validation of DTI tractography. 83140J 2012 Image Processing https://doi.org/10.1117/12.911546 https://www.wikidata.org/entity/Q37396678 conf/miip/2012 db/conf/miip/miip2012.html#GouttardGKG12

Yi Wang 0069 Aditya Gupta 0004 Zhexing Liu Hui Zhang 0005 Maria L. Escolar John H. Gilmore Sylvain Gouttard Pierre Fillard Eric A. Maltbie Guido Gerig Martin Styner DTI registration in atlas based fiber analysis of infantile Krabbe disease. 1577-1586 2011 55 NeuroImage 4 https://doi.org/10.1016/j.neuroimage.2011.01.038 https://www.wikidata.org/entity/Q34708950 db/journals/neuroimage/neuroimage55.html#WangGLZEGGFMGS11

Pierre Fillard Maxime Descoteaux Alvina Goh Sylvain Gouttard Ben Jeurissen James Malcolm Alonso Ramirez-Manzanares Marco Reisert Ken E. Sakaie Fatima Tensaouti Ting Yo Jean-François Mangin Cyril Poupon Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom. 220-234 2011 56 NeuroImage 1 https://doi.org/10.1016/j.neuroimage.2011.01.032 https://www.wikidata.org/entity/Q34160279 db/journals/neuroimage/neuroimage56.html#FillardDGGJMRRSTYMP11

Manasi Datar Joshua E. Cates P. Thomas Fletcher Sylvain Gouttard Guido Gerig Ross T. Whitaker Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging. 167-174 2009 MICCAI (1) https://doi.org/10.1007/978-3-642-04271-3_21 https://www.wikidata.org/entity/Q57511748 conf/miccai/2009-2 db/conf/miccai/miccai2009-2.html#DatarCFGGW09 Sylvain Gouttard Marcel Prastawa Elizabeth Bullitt Weili Lin Casey Goodlett Guido Gerig Constrained Data Decomposition and Regression for Analyzing Healthy Aging from Fiber Tract Diffusion Properties. 321-328 2009 MICCAI (1) https://doi.org/10.1007/978-3-642-04268-3_40 https://www.wikidata.org/entity/Q57511738 conf/miccai/2009-1 db/conf/miccai/miccai2009-1.html#GouttardPBLGG09 Sylvain Gouttard Martin Styner Marcel Prastawa Joseph Piven Guido Gerig Assessment of Reliability of Multi-site Neuroimaging Via Traveling Phantom Study. 263-270 2008 MICCAI (2) https://doi.org/10.1007/978-3-540-85990-1_32 https://www.wikidata.org/entity/Q56797913 conf/miccai/2008-2 db/conf/miccai/miccai2008-2.html#GouttardSPPG08 Sylvain Gouttard Martin Styner Sarang C. Joshi Rachel Gimpel Smith Heather Cody Hazlett Guido Gerig Subcortical structure segmentation using probabilistic atlas priors. 65122J 2007 Image Processing https://doi.org/10.1117/12.708626 https://www.wikidata.org/entity/Q57512007 conf/miip/2007 db/conf/miip/miip2007.html#GouttardSJSHG07

Isabelle Corouge P. Thomas Fletcher Sarang C. Joshi Sylvain Gouttard Guido Gerig Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis. 786-798 2006 10 Medical Image Anal. 5 https://doi.org/10.1016/j.media.2006.07.003 https://www.wikidata.org/entity/Q28259403 db/journals/mia/mia10.html#CorougeFJGG06

Isabelle Corouge Guido Gerig Sylvain Gouttard Towards a Shape Model of White Matter Fiber Bundles Using Diffusion Tensor MRI. 344-347 2004 conf/isbi/2004 ISBI db/conf/isbi/isbi2004.html#CorougeGG04 https://doi.org/10.1109/ISBI.2004.1398545 Isabelle Corouge Sylvain Gouttard Guido Gerig A Statistical Shape Model of Individual Fiber Tracts Extracted from Diffusion Tensor MRI. 671-679 https://doi.org/10.1007/978-3-540-30136-3_82 2004 conf/miccai/2004-2 MICCAI (2) db/conf/miccai/miccai2004-2.html#CorougeGG04 Mihye Ahn Jean-Baptiste Berger Charlotte A. Boettiger François Budin Elizabeth Bullitt Margaret Burchinal Joshua E. Cates Vicki W. Chanon Isabelle Corouge Stephen Dager Manasi Datar Maxime Descoteaux Cheryl Dietrich Guangwei Du Mala Elam Maria L. Escolar Alan C. Evans Mahshid Farzinfar Pierre Fillard P. Thomas Fletcher Xiujuan Geng Guido Gerig John H. Gilmore Alvina Goh Casey Goodlett Karen Grewen Hongbin Gu Aditya Gupta 0004 Heather Cody Hazlett Xuemei Huang 0002 Ben Jeurissen Josephine Johns Hans J. Johnson Sarang C. Joshi Adrien Kaiser Marek Kubicki Abhishek Kumar 0001 Weili Lin Zhexing Liu James Malcolm Eric A. Maltbie Jean-François Mangin Joy T. Matsui Robert C. McKinstry Prasanna Muralidharan Ipek Oguz Clementine Ouziel Sarah Paterson Emilie Perrot Joseph Piven Cyril Poupon Marcel Prastawa Sonia Pujol Alonso Ramirez-Manzanares Marco Reisert Ashley Rumple Ken E. Sakaie Anuja Sharma Yundi Shi Rachel Gimpel Smith Martin StynerMartin Andreas Styner Fatima Tensaouti Clement Vachet Avantika Vardhan Audrey R. Verde Jiahui Wang Yi Wang 0069 Ross T. Whitaker Ting Yo Hui Zhang 0005 Hongtu Zhu