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ORCIDAnthony Gitter
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2020 – today
- 2026
[j20]Hugo MacDermott-Opeskin, Jenke Scheen, Cas Wognum, Joshua T. Horton, Devany West, Alexander Matthew Payne, Maria A. Castellanos, Sean Colby, Edward J. Griffen, David Cousins, Jessica Stacey, Lauren Reid, Jasmin Cara Aschenbrenner, Daren Fearon, Blake Balcomb, Peter Marples, Charles W. E. Tomlinson, Ryan Lithgo, Andre S. Godoy, Max Winokan, Haim Barr, Noa Lahav, Michael Lavi, Shirley Duberstein, Galit Cohen, Gwendolyn Fate, Bruce Lefker, Ralph Robinson, Tamas Szommer, Nick Lynch, David D. L. Minh, Van Ngoc Thuy La, Lulu Kang, Kate Huddleston, Ryan Renslow, Mallory Tollefson, W. Patrick Walters, Cynthia Xu, Jonny Hsu, Julien St-Laurent, Honore Etsmoberg, Lu Zhu, Andrew Quirke, Mohamed Iliyas Abdul Haleem, Irfan Alibay, Gunjan Baid, Benjamin Birnbaum, Kevin P. Bishop, Hugo-Javier Bohórquez, Ashmita Bose, C. J. Brown, Jackson W. Burns, Lianjin Cai, Ruel Cedeno, Stephane de Cesco, Vladimir I. Chupakhin, Finlay Clark, Daniel J. Cole, Carles Corbi-Verge, Muhammad Danial, Alec Davi, Wim Dehaen, Niklas Piet Doering, Alexis Dougha, Marie-Pierre Dréanic, Bryce Eakin, Anatol Ehrlich, Rokas Elijosius, Jozef Fülöp, Anthony Gitter, Kenneth Goossens, Yaowen Gu, Teresa Head-Gordon, Laurent Hoffer, Johan Hofmans, Ellena Jiang, Benjamin Kaminow, Sina Khosravi, Asma Feriel Khoualdi, Eelke B. Lenselink, Zhirong Liu, Yue Liu, Sijie Liu, Yizhou Ma, Patrick Maher, Imke Mayer, Oscar Mendez-Lucio, Antonia S. J. S. Mey, Julien Michel, Floriane Montanari, Taoyu Niu, Ryusei Ogino, Ashok Palaniappan, Xiaolin Pan, Auro Patnaik, Long-Hung Dinh Pham, Luis Pinto, Justin Purnomo, Alex Rich, Lars Schaaf, Christoph Schran, Rajeev Kumar Singh, Mounika Srilakshmi, Satya Pratik Srivastava, Kunyang Sun, Zhaoxi Sun, Valerij Talagayev, Balamurugan Thirukonda Subramanian Balakrishnan, Ida Titus, Alexandre Tkatchenko, Wojtek Treyde, Giovanni Tricarico, Austin Tripp, Nopsinth Vithayapalert, Yingze Wang, Azmine Toushik Wasi, Steffen Wedig, Gerhard Wolber, Bofei Xu, Weijun Zhou, Frank von Delft, Alpha Lee, Karla Kirkegaard, Peter Sjö, James S. Fraser, John D. Chodera:
A Computational Community Blind Challenge on Pan-Coronavirus Drug Discovery Data. J. Chem. Inf. Model. 66(6): 3129-3149 (2026)- 2025
- [j19]Peng Liu, David Page, Paul Ahlquist, Irene M. Ong, Anthony Gitter
:
MPAC: a computational framework for inferring pathway activities from multi-omic data. Bioinform. 41(8) (2025) - [j18]Yifan Deng, Spencer S. Ericksen, Anthony Gitter:
Chemical Language Model Linker: Blending Text and Molecules with Modular Adapters. J. Chem. Inf. Model. 65(17): 8944-8956 (2025) - [j17]Shengchao Liu, Yanjing Li, Zhuoxinran Li, Anthony Gitter, Yutao Zhu, Jiarui Lu, Zhao Xu, Weili Nie, Arvind Ramanathan, Chaowei Xiao, Jian Tang, Hongyu Guo, Anima Anandkumar:
A text-guided protein design framework. Nat. Mac. Intell. 7(4): 580-591 (2025) - [c4]Yifan Deng, Spencer S. Ericksen, Anthony Gitter:
Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context. EMNLP 2025: 27337-27362 - [i12]Arnav Sharma, Anthony Gitter:
Exploring zero-shot structure-based protein fitness prediction. CoRR abs/2504.16886 (2025) - [i11]Elizabeth Fahsbender, Alma Andersson, Jeremy Ash, Polina Binder, Daniel Burkhardt, Benjamin Chang, Georg K. Gerber, Anthony Gitter, Patrick Godau, Ankit Gupta, Genevieve Haliburton, Siyu He, Trey Ideker, Ivana Jelic, Aly Khan, Yang-Joon Kim, Aditi Krishnapriyan, Jon M. Laurent, Tianyu Liu, Emma Lundberg, Shalin B. Mehta, Rob Moccia, Angela Oliveira Pisco, Katherine S. Pollard, Suresh Ramani, Julio Saez-Rodriguez, Yasin Senbabaoglu, Elana Simon, Srinivasan Sivanandan, Gustavo Stolovitzky, Marc Valer, Bo Wang, Xikun Zhang, James Zou, Katrina Kalantar:
Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop. CoRR abs/2507.10502 (2025) - [i10]Yifan Deng, Spencer S. Ericksen, Anthony Gitter:
Assay2Mol: large language model-based drug design using BioAssay context. CoRR abs/2507.12574 (2025) - 2024
- [i9]Daniel McNeela, Frederic Sala, Anthony Gitter:
Product Manifold Representations for Learning on Biological Pathways. CoRR abs/2401.15478 (2024) - [i8]Yifan Deng, Spencer S. Ericksen, Anthony Gitter:
Chemical Language Model Linker: blending text and molecules with modular adapters. CoRR abs/2410.20182 (2024) - 2023
- [j16]Moayad Alnammi, Shengchao Liu, Spencer S. Ericksen, Gene E. Ananiev, Andrew F. Voter, Song Guo, James L. Keck, F. Michael Hoffmann, Scott A. Wildman, Anthony Gitter:
Evaluating Scalable Supervised Learning for Synthesize-on-Demand Chemical Libraries. J. Chem. Inf. Model. 63(17): 5513-5528 (2023) - [i7]Shengchao Liu, Yutao Zhu, Jiarui Lu, Zhao Xu, Weili Nie, Anthony Gitter, Chaowei Xiao, Jian Tang, Hongyu Guo, Anima Anandkumar:
A Text-guided Protein Design Framework. CoRR abs/2302.04611 (2023) - 2022
- [j15]Chris S. Magnano, Fangzhou Mu, Rosemary S. Russ, Milica Cvetkovic, Debora Treu, Anthony Gitter:
An approachable, flexible and practical machine learning workshop for biologists. Bioinform. 38(Supplement_1): i10-i18 (2022) - [j14]Benjamin D. Lee, Anthony Gitter, Casey S. Greene, Sebastian Raschka, Finlay Maguire, Alexander J. Titus, Michael D. Kessler, Alexandra J. Lee, Marc G. Chevrette, Paul Allen Stewart, Thiago Britto-Borges, Evan M. Cofer, Kun-Hsing Yu, Juan Jose Carmona, Elana J. Fertig, Alexandr A. Kalinin, Brandon Signal, Benjamin J. Lengerich, Timothy J. Triche Jr., Simina M. Boca:
Ten quick tips for deep learning in biology. PLoS Comput. Biol. 18(3) (2022) - [i6]Chris S. Magnano, Anthony Gitter:
Graph algorithms for predicting subcellular localization at the pathway level. CoRR abs/2212.05991 (2022) - 2021
- [j13]Sam Gelman, Sarah A. Fahlberg, Pete Heinzelman, Philip A. Romero, Anthony Gitter:
Neural networks to learn protein sequence-function relationships from deep mutational scanning data. Proc. Natl. Acad. Sci. USA 118(48): e2104878118 (2021) - [c3]Halie M. Rando, Simina M. Boca, Lucy D'Agostino McGowan, Daniel S. Himmelstein, Michael P. Robson, Vincent Rubinetti, Ryan Velazquez, Casey S. Greene, Anthony Gitter:
An Open-Publishing Response to the COVID-19 Infodemic. DISCO@JCDL 2021: 29-38 - [i5]Benjamin D. Lee, Anthony Gitter, Casey S. Greene, Sebastian Raschka, Finlay Maguire, Alexander J. Titus, Michael D. Kessler, Alexandra J. Lee, Marc G. Chevrette, Paul Allen Stewart, Thiago Britto-Borges, Evan M. Cofer, Kun-Hsing Yu, Juan Jose Carmona, Elana J. Fertig, Alexandr A. Kalinin, Beth Signal, Benjamin J. Lengerich, Timothy J. Triche Jr., Simina M. Boca:
Ten Quick Tips for Deep Learning in Biology. CoRR abs/2105.14372 (2021) - [i4]Halie M. Rando, Simina M. Boca, Lucy D'Agostino McGowan, Daniel S. Himmelstein, Michael P. Robson, Vincent Rubinetti, Ryan Velazquez, Casey S. Greene, Anthony Gitter:
An Open-Publishing Response to the COVID-19 Infodemic. CoRR abs/2109.08633 (2021) - 2020
- [j12]David Merrell, Anthony Gitter:
Inferring signaling pathways with probabilistic programming. Bioinform. 36(Supplement-2): i822-i830 (2020) - [j11]Thevaa Chandereng, Anthony Gitter:
Lag penalized weighted correlation for time series clustering. BMC Bioinform. 21(1): 21 (2020) - [i3]David Merrell, Anthony Gitter:
Inferring Signaling Pathways with Probabilistic Programming. CoRR abs/2005.14062 (2020)
2010 – 2019
- 2019
- [j10]Shengchao Liu, Moayad Alnammi, Spencer S. Ericksen, Andrew F. Voter, Gene E. Ananiev, James L. Keck, F. Michael Hoffmann, Scott A. Wildman, Anthony Gitter:
Practical Model Selection for Prospective Virtual Screening. J. Chem. Inf. Model. 59(1): 282-293 (2019) - [j9]Jesse G. Meyer, Shengchao Liu, Ian J. Miller, Joshua J. Coon, Anthony Gitter:
Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests. J. Chem. Inf. Model. 59(10): 4438-4449 (2019) - [j8]Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter:
Open collaborative writing with Manubot. PLoS Comput. Biol. 15(6) (2019) - [j7]Huikun Zhang, Spencer S. Ericksen, Ching-pei Lee, Gene E. Ananiev, Nathan Wlodarchak, Peng Yu, Julie C. Mitchell, Anthony Gitter, Stephen J. Wright, F. Michael Hoffmann, Scott A. Wildman, Michael A. Newton:
Predicting kinase inhibitors using bioactivity matrix derived informer sets. PLoS Comput. Biol. 15(8) (2019) - [c2]Shengchao Liu, Yingyu Liang, Anthony Gitter:
Loss-Balanced Task Weighting to Reduce Negative Transfer in Multi-Task Learning. AAAI 2019: 9977-9978 - 2018
- [j6]Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch:
Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. PLoS Comput. Biol. 14(5) (2018) - 2016
- [j5]Nurcan Tuncbag, Sara J. C. Gosline, Amanda J. Kedaigle, Anthony R. Soltis, Anthony Gitter, Ernest Fraenkel:
Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package. PLoS Comput. Biol. 12(4) (2016) - [i2]Anthony Gitter, Furong Huang, Ragupathyraj Valluvan, Ernest Fraenkel, Animashree Anandkumar:
Unsupervised learning of transcriptional regulatory networks via latent tree graphical models. CoRR abs/1609.06335 (2016) - 2014
- [j4]Siddhartha Jain, Anthony Gitter, Ziv Bar-Joseph:
Multitask Learning of Signaling and Regulatory Networks with Application to Studying Human Response to Flu. PLoS Comput. Biol. 10(12) (2014) - [c1]Anthony Gitter, Alfredo Braunstein, Andrea Pagnani, Carlo Baldassi, Christian Borgs, Jennifer T. Chayes, Riccardo Zecchina, Ernest Fraenkel:
Sharing Information to Reconstruct Patient-Specific Pathways in Heterogeneous Diseases. Pacific Symposium on Biocomputing 2014: 39-50 - 2013
- [j3]Anthony Gitter, Ziv Bar-Joseph:
Identifying proteins controlling key disease signaling pathways. Bioinform. 29(13): 227-236 (2013) - 2012
- [j2]Marcel H. Schulz, William E. Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph:
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data. BMC Syst. Biol. 6: 104 (2012) - [j1]Saket Navlakha, Anthony Gitter, Ziv Bar-Joseph:
A Network-based Approach for Predicting Missing Pathway Interactions. PLoS Comput. Biol. 8(8) (2012) - 2011
- [i1]Réka Albert, Bhaskar DasGupta, Anthony Gitter, Gamze Gürsoy, Rashmi Hegde, Pradyut Paul, Gowri Sangeetha Sivanathan, Eduardo D. Sontag:
A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks. CoRR abs/1108.6113 (2011)
Coauthor Index
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last updated on 2026-03-27 21:08 CET by the dblp team
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