PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates.

Lazaros Mavridis

Lazaros Mavridis Robert W. Janes PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates. 56-63 2017 33 Bioinform. 1 https://doi.org/10.1093/bioinformatics/btw554 https://www.wikidata.org/entity/Q39368360 db/journals/bioinformatics/bioinformatics33.html#MavridisJ17

Lee Whitmore Andrew John Miles Lazaros Mavridis Robert W. Janes B. A. Wallace PCDDB: new developments at the Protein Circular Dichroism Data Bank. D303-D307 2017 45 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkw796 https://www.wikidata.org/entity/Q31128668 db/journals/nar/nar45.html#WhitmoreMMJW17

Katarina Nikolic Lazaros Mavridis Oscar M. Bautista-Aguilera José Marco-Contelles Holger Stark Maria do Carmo Carreiras Ilaria Rossi Paola Massarelli Danica Agbaba Rona R. Ramsay John B. O. Mitchell Predicting targets of compounds against neurological diseases using cheminformatic methodology. 183-198 2015 29 J. Comput. Aided Mol. Des. 2 https://doi.org/10.1007/s10822-014-9816-1 https://www.wikidata.org/entity/Q44608034 db/journals/jcamd/jcamd29.html#NikolicMBMSCRMARM15

Khadija Musayeva Tristan Henderson John B. O. Mitchell Lazaros Mavridis PFClust: an optimised implementation of a parameter-free clustering algorithm. 5 2014 9 Source Code Biol. Medicine https://doi.org/10.1186/1751-0473-9-5 https://www.wikidata.org/entity/Q41991188 db/journals/scfbm/scfbm9.html#MusayevaHMM14

Lazaros Mavridis Neetika Nath John B. O. Mitchell PFClust: a novel parameter free clustering algorithm. 213 2013 14 BMC Bioinform. https://doi.org/10.1186/1471-2105-14-213 https://www.wikidata.org/entity/Q34789966 db/journals/bmcbi/bmcbi14.html#MavridisNM13

Lazaros Mavridis John B. O. Mitchell Predicting the protein targets for athletic performance-enhancing substances. 31 2013 5 J. Cheminformatics https://doi.org/10.1186/1758-2946-5-31 https://www.wikidata.org/entity/Q36982836 db/journals/jcheminf/jcheminf5.html#MavridisM13

David W. Ritchie Anisah W. Ghoorah Lazaros Mavridis Vishwesh Venkatraman Fast protein structure alignment using Gaussian overlap scoring of backbone peptide fragment similarity. 3274-3281 2012 28 Bioinform. 24 https://doi.org/10.1093/bioinformatics/bts618 https://www.wikidata.org/entity/Q30422730 db/journals/bioinformatics/bioinformatics28.html#RitchieGMV12

Violeta I. Pérez-Nueno Vishwesh Venkatraman Lazaros Mavridis David W. Ritchie Detecting Drug Promiscuity Using Gaussian Ensemble Screening. 1948-1961 2012 52 J. Chem. Inf. Model. 8 https://doi.org/10.1021/ci3000979 https://www.wikidata.org/entity/Q47434343 db/journals/jcisd/jcisd52.html#Perez-NuenoVMR12

Violeta I. Pérez-Nueno Vishwesh Venkatraman Lazaros Mavridis David W. Ritchie Predicting drug polypharmacology using a novel surface property similarity-based approach. 19 2011 3 J. Cheminformatics S-1 https://doi.org/10.1186/1758-2946-3-S1-O19 https://www.wikidata.org/entity/Q47192989 db/journals/jcheminf/jcheminf3S.html#Perez-NuenoVMR11

Vishwesh Venkatraman Violeta I. Pérez-Nueno Lazaros Mavridis David W. Ritchie Comprehensive Comparison of Ligand-Based Virtual Screening Tools Against the DUD Data set Reveals Limitations of Current 3D Methods. 2079-2093 2010 50 J. Chem. Inf. Model. 12 https://doi.org/10.1021/ci100263p https://www.wikidata.org/entity/Q33751455 db/journals/jcisd/jcisd50.html#VenkatramanPMR10

Gary Macindoe Lazaros Mavridis Vishwesh Venkatraman Marie-Dominique Devignes David W. Ritchie HexServer: an FFT-based protein docking server powered by graphics processors. 445-449 2010 38 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkq311 https://www.wikidata.org/entity/Q42011577 db/journals/nar/nar38.html#MacindoeMVDR10

Lazaros Mavridis Vishwesh Venkatraman David W. Ritchie Naoto Morikawa Rumen Andonov Alexandre Cornu Noël Malod-Dognin Jacques Nicolas Maja Temerinac-Ott Marco Reisert Hans Burkhardt Apostolos Axenopoulos Petros Daras SHREC'10 Track: Protein Model Classification. 117-124 2010 3DOR@Eurographics https://doi.org/10.2312/3DOR/3DOR10/117-124 conf/3dor/2010 db/conf/3dor/3dor2010.html#MavridisVRMACMNTRBAD10 David W. Ritchie Vishwesh Venkatraman Lazaros Mavridis Using Graphics Processors to Accelerate Protein Docking Calculations. 146-155 2010 HealthGrid https://doi.org/10.3233/978-1-60750-583-9-146 conf/healthgrid/2010 db/conf/healthgrid/healthgrid2010.html#RitchieVM10 Lazaros Mavridis David W. Ritchie 3D-Blast: 3D Protein Structure Alignment, Comparison, and Classification Using Spherical Polar Fourier Correlations. 281-292 2010 Pacific Symposium on Biocomputing http://psb.stanford.edu/psb-online/proceedings/psb10/mavridis.pdf conf/psb/2010 db/conf/psb/psb2010.html#MavridisR10

Lazaros Mavridis Brian D. Hudson David W. Ritchie Toward High Throughput 3D Virtual Screening Using Spherical Harmonic Surface Representations. 1787-1796 2007 47 J. Chem. Inf. Model. 5 https://doi.org/10.1021/ci7001507 https://www.wikidata.org/entity/Q51906445 db/journals/jcisd/jcisd47.html#MavridisHR07

Danica Agbaba Rumen Andonov Apostolos Axenopoulos Oscar M. Bautista-Aguilera Hans Burkhardt Maria do Carmo Carreiras Alexandre Cornu Petros Daras Marie-Dominique Devignes Anisah W. Ghoorah Tristan Henderson Brian D. Hudson Robert W. Janes Gary Macindoe Noël Malod-Dognin José Marco-Contelles Paola Massarelli Andrew J. MilesAndrew John Miles John B. O. Mitchell Naoto Morikawa Khadija Musayeva Neetika Nath Jacques Nicolas Katarina Nikolic Violeta I. Pérez-Nueno Rona R. Ramsay Marco Reisert David W. Ritchie Ilaria Rossi Holger Stark Maja Temerinac-Ott Vishwesh Venkatraman B. A. Wallace Lee Whitmore