From genes to trajectories: mapping genetic influences on Huntington's disease progression.

Sanjoy Dey

Sanjoy Dey Zhaonan Sun John Warner Eileen Koski Elif Eyigöz Swati Sathe Cristina Sampaio Jianying Hu From genes to trajectories: mapping genetic influences on Huntington's disease progression. 2026 42 Bioinform. 3 https://doi.org/10.1093/bioinformatics/btag072 db/journals/bioinformatics/bioinformatics42.html#DeySWKESSH26 streams/journals/bioinformatics

Haoyu Yang Sanjoy Dey Pablo Meyer 0001 Genetics-Driven Personalized Disease Progression Model. 2025 March abs/2503.00028 CoRR https://doi.org/10.48550/arXiv.2503.00028 db/journals/corr/corr2503.html#abs-2503-00028 streams/journals/corr

Hongyang Li Sanjoy Dey Bum Chul Kwon Michael M. Danziger Michal Rosen-Tzvi Jianying Hu James Kozloski Ching-Huei Tsou Bharath Dandala Pablo Meyer 0001 BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects. 2025 July abs/2507.05265 CoRR https://doi.org/10.48550/arXiv.2507.05265 db/journals/corr/corr2507.html#abs-2507-05265 streams/journals/corr

Parthasarathy Suryanarayanan Yunguang Qiu Shreyans Sethi Diwakar Mahajan Hongyang Li Yuxin Yang 0001 Elif K. Eyigöz Aldo Guzmán-Sáenz Daniel E. Platt Timothy H. Rumbell Kenney Ng Sanjoy Dey Myson Burch Bum Chul Kwon Pablo Meyer 0001 Feixiong Cheng Jianying Hu Joseph A. Morrone Multi-view biomedical foundation models for molecule-target and property prediction. 2024 abs/2410.19704 CoRR https://doi.org/10.48550/arXiv.2410.19704 db/journals/corr/corr2410.html#abs-2410-19704 streams/journals/corr

Sanjoy Dey Prithwish Chakraborty Bum Chul Kwon Amit Dhurandhar Mohamed F. Ghalwash Fernando J. Suarez Saiz Kenney Ng Daby Sow Kush R. Varshney Pablo Meyer 0001 Human-centered explainability for life sciences, healthcare, and medical informatics. 100493 2022 3 Patterns 5 https://doi.org/10.1016/j.patter.2022.100493 https://www.wikidata.org/entity/Q112283109 db/journals/patterns/patterns3.html#DeyCKDGSNSVM22

Sanjoy Dey Aritra Bose Subrata Saha Prithwish Chakraborty Mohamed F. Ghalwash Filippo Utro Aldo Guzmán-Sáenz Kenney Ng Jianying Hu Laxmi Parida Daby Sow Impact of Clinical and Genomic Factors on COVID-19 Disease Severity. 2021 AMIA https://knowledge.amia.org/74229-amia-1.4622266/t003-1.4626466/t003-1.4626467/3577567-1.4626750/3577607-1.4626747 conf/amia/2021 db/conf/amia/amia2021.html#DeyBSCGUGNHPS21 Sanjoy Dey Ping Zhang 0016 Mohamed F. Ghalwash Chandramouli Maduri Daby Sow Zachary Shahn Finding Causal Mechanistic Drug-Drug Interactions from Observational Data. 2020 AMIA https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3412457-1.4606545/3417277-1.4606542 conf/amia/2020 db/conf/amia/amia2020.html#Dey0GMSS20 Sanjoy Dey Zhaonan Sun Amrita Mohan Cristina Sampaio Jianying Hu Analyzing impact of genomic factors on HD progression through an integrated disease progress model. 2020 AMIA https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3413400-1.4606141/3417134-1.4606138 conf/amia/2020 db/conf/amia/amia2020.html#DeySMSH20 Prithwish Chakraborty Bum Chul Kwon Sanjoy Dey Amit Dhurandhar Daniel M. Gruen Kenney Ng Daby Sow Kush R. Varshney Tutorial on Human-Centered Explainability for Healthcare. 3547-3548 2020 KDD https://doi.org/10.1145/3394486.3406470 conf/kdd/2020 db/conf/kdd/kdd2020.html#ChakrabortyKDDG20 Sanjoy Dey Ping Zhang 0016 Daby Sow Kenney Ng PerDREP: Personalized Drug Effectiveness Prediction from Longitudinal Observational Data. 1258-1268 2019 KDD https://doi.org/10.1145/3292500.3330928 conf/kdd/2019 db/conf/kdd/kdd2019.html#DeyZSN19

Sanjoy Dey Heng Luo 0002 Achille Fokoue Jianying Hu Ping Zhang 0016 Predicting adverse drug reactions through interpretable deep learning framework. 476:1-476:13 2018 19-S BMC Bioinform. 21 https://doi.org/10.1186/s12859-018-2544-0 https://www.wikidata.org/entity/Q60927156 db/journals/bmcbi/bmcbi19S.html#DeyLFHZ18

Sanjoy Dey Ping Zhang 0016 Mohamed F. Ghalwash Zach Shahn Daby Sow Estimating Causal Multi-Drug-Drug Interaction for Adverse Drug Reactions. 2018 AMIA https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2970128-1.4263028/2976988-1.4263025 conf/amia/2018 db/conf/amia/amia2018.html#Dey0GSS18 Sanjoy Dey Ping Zhang 0016 Kenney Ng Estimating Personalized Drug Effects with Longitudinal Observational Data. 2018 AMIA https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2968444-1.4263531/2976987-1.4263528 conf/amia/2018 db/conf/amia/amia2018.html#DeyZN18 Kyle Yingkai Gao Achille Fokoue Heng Luo 0002 Sanjoy Dey Arun Iyengar Ping Zhang 0016 An Interpretable End-to-End Framework for Drug-Target Interaction Prediction Through Deep Neural Representation. 2018 AMIA https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2971599-1.4262956/2976830-1.4262953 conf/amia/2018 db/conf/amia/amia2018.html#GaoFLDI018 Kyle Yingkai Gao Achille Fokoue Heng Luo 0002 Arun Iyengar Sanjoy Dey Ping Zhang 0016 Interpretable Drug Target Prediction Using Deep Neural Representation. 3371-3377 2018 IJCAI https://doi.org/10.24963/ijcai.2018/468 conf/ijcai/2018 db/conf/ijcai/ijcai2018.html#GaoFLIDZ18 Pei-Yun Sabrina Hsueh Sanjoy Dey Subhro Das Thomas Wetter Making Sense of Patient-Generated Health Data for Interpretable Patient-Centered Care: The Transition from "More" to "Better". 113-117 2017 MedInfo https://doi.org/10.3233/978-1-61499-830-3-113 conf/medinfo/2017 db/conf/medinfo/medinfo2017.html#HsuehDDW17

Catherine H. Olson Sanjoy Dey Vipin Kumar 0001 Karen A. Monsen Bonnie L. Westra Clustering of elderly patient subgroups to identify medication-related readmission risks. 43-52 2016 85 Int. J. Medical Informatics 1 https://doi.org/10.1016/j.ijmedinf.2015.10.004 https://www.wikidata.org/entity/Q40365041 db/journals/ijmi/ijmi85.html#OlsonDKMW16

Sanjoy Dey Yajuan Wang Roy J. Byrd Kenney Ng Steven R. Steinhubl Christopher deFilippi Walter F. Stewart Characterizing Physicians Practice Phenotype from Unstructured Electronic Health Records. 2016 AMIA https://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2500890-1.3364910/2500061-1.3364905 conf/amia/2016 db/conf/amia/amia2016.html#DeyWBNSdS16 Lisiane Pruinelli Pranjul Yadav Andrew Hangsleben Jakob Johnson Sanjoy Dey Maribet C. McCarty Vipin Kumar 0001 Connie White-Delaney Michael S. Steinbach Bonnie L. Westra György J. Simon A Data Mining Approach to Determine Sepsis Guideline Impact on Inpatient Mortality and Complications. 2016 CRI http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a038-1.3012880/a040-1.3012875 conf/cri/2016 db/conf/cri/cri2016.html#PruinelliYHJDMK16 Sanjoy Dey Katherine Hauwiller Pranjul Yadav Michael S. Steinbach György J. Simon Vipin Kumar 0001 Connie White-Delaney Bonnie L. Westra Predicting the Factors of Improvement of Health Status of Home Health Care Patients: A Holistic Data Mining Approach. 2015 AMIA https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2247302-1.2745277/2249270-1.2745274 conf/amia/2015 db/conf/amia/amia2015.html#DeyHYSSKWW15 Lisiane Pruinelli Pranjul Yadav Andrew Hangsleben Kevin Schiroo Sanjoy Dey György J. Simon Maribet C. McCarty Vipin Kumar 0001 Connie White-Delaney Michael S. Steinbach Bonnie L. Westra Clustering Health Data to Discover EBP Interventions for Sepsis Prevention and Treatment for Health Disparities. 2015 AMIA https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248988-1.2744719/2247927-1.2744715 conf/amia/2015 db/conf/amia/amia2015.html#PruinelliYHSDSM15 Sanjoy Dey Rohit Gupta 0003 Michael S. Steinbach Vipin Kumar 0001 Predictive Models for Integrating Clinical and Genomic Data. 433-465 2015 Healthcare Data Analytics http://www.crcnetbase.com/doi/abs/10.1201/b18588-16 books/crc/healthcare2015 db/books/collections/healthcare2015.html#DeyGSK15 Lisiane Pruinelli Sanjoy Dey György J. Simon Pranjul Yadav Andrew Hangsleben Katherine Hauwiller Vipin Kumar 0001 Connie White-Delaney Michael S. Steinbach Bonnie L. Westra Data Mining Methodologies to Discover Best practices for Diabetic Patients with Health Disparities. 2014 AMIA https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-481-1.1544228/a-482-1.1544225 conf/amia/2014 db/conf/amia/amia2014.html#PruinelliDSYHHK14 Sanjoy Dey György J. Simon Bonnie L. Westra Michael S. Steinbach Vipin Kumar 0001 Mining Interpretable and Predictive Diagnosis Codes from Multi-source Electronic Health Records. 1055-1063 2014 SDM https://doi.org/10.1137/1.9781611973440.120 conf/sdm/2014 db/conf/sdm/sdm2014.html#DeySWSK14 Sanjoy Dey Jeremy Weed Joanna Fakhoury Jacob Cooner György J. Simon Michael S. Steinbach Bonnie L. Westra Vipin Kumar 0001 Data Mining to Predict Mobility Outcomes for Older Adults Receiving Home Health Care. 2013 AMIA https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-03-1.584514/f-003-1.584515/a-093-1.584650/a-109-1.584647 conf/amia/2013 db/conf/amia/amia2013.html#DeyWFCSSWK13 Sanjoy Dey Kelvin O. Lim Gowtham Atluri Angus W. MacDonald III Michael S. Steinbach Vipin Kumar 0001 A pattern mining based integrative framework for biomarker discovery. 498-505 2012 BCB https://doi.org/10.1145/2382936.2383000 conf/bcb/2012 db/conf/bcb/bcb2012.html#DeyLAMSK12 Gowtham Atluri Sanjoy Dey Gang Fang 0004 Sean Landman Vanja Paunic Wen Wang 0002 Michael S. Steinbach Vipin Kumar 0001 Invited: Discovering combinatorial biomarkers. 1-2 2012 ICCABS https://doi.org/10.1109/ICCABS.2012.6182625 https://doi.ieeecomputersociety.org/10.1109/ICCABS.2012.6182625 conf/iccabs/2012 db/conf/iccabs/iccabs2012.html#AtluriDFLPWSK12 Satya Prasad Majumder Sanjoy Dey Evaluation of BER/PER Performance of a FLAMINGO Network. 191-197 https://doi.org/10.1007/978-3-540-30176-9_25 2004 conf/aacc/2004 AACC db/conf/aacc/aacc2004.html#MajumderD04 Sanjoy Dey Sharif Mahmud A Web-Based Examination System in the Context of Bangladesh. 296-301 https://doi.org/10.1007/978-3-540-30176-9_38 2004 conf/aacc/2004 AACC db/conf/aacc/aacc2004.html#DeyM04 Gowtham Atluri Aritra Bose Myson Burch Roy J. Byrd Prithwish Chakraborty Feixiong Cheng Jacob Cooner Bharath Dandala Michael M. Danziger Subhro Das Christopher deFilippi Amit Dhurandhar Elif EyigözElif K. Eyigöz Joanna Fakhoury Gang Fang 0004 Achille Fokoue Kyle Yingkai Gao Mohamed F. Ghalwash Dan GruenDaniel M. Gruen Rohit Gupta 0003 Aldo Guzmán-Sáenz Andrew Hangsleben Katherine Hauwiller Pei-Yun Sabrina Hsueh Jianying Hu Arun Iyengar Jakob Johnson Eileen Koski James Kozloski Vipin Kumar 0001 Bum Chul Kwon Sean Landman Hongyang Li Kelvin O. Lim Heng Luo 0002 Angus W. MacDonald III Chandramouli Maduri Diwakar Mahajan Sharif Mahmud Satya Prasad Majumder Maribet C. McCarty Pablo Meyer 0001 Amrita Mohan Karen A. Monsen Joseph A. Morrone Kenney Ng Catherine H. Olson Laxmi Parida Vanja Paunic Daniel E. Platt Lisiane Pruinelli Yunguang Qiu Michal Rosen-Tzvi Timothy H. Rumbell Subrata Saha Fernando J. Suarez Saiz Cristina Sampaio Swati Sathe Kevin Schiroo Shreyans Sethi Zach ShahnZachary Shahn György J. Simon Daby M. SowDaby Sow Michael S. Steinbach Steven R. Steinhubl Walter F. Stewart Zhaonan Sun Parthasarathy Suryanarayanan Ching-Huei Tsou Filippo Utro Kush R. Varshney Wen Wang 0002 Yajuan Wang John Warner Jeremy Weed Bonnie L. Westra Thomas Wetter Connie White-Delaney Pranjul Yadav Haoyu Yang Yuxin Yang 0001 Ping Zhang 0016