Free universal database tool and SQL client

GraalVM compiles applications into native executables that start instantly, scale fast, and use fewer compute resources 🚀

1️⃣🐝🏎️ The One Billion Row Challenge -- A fun exploration of how quickly 1B rows from a text file can be aggregated with Java

RStudio is an integrated development environment (IDE) for R

An Engine-Agnostic Deep Learning Framework in Java

Jlama is a modern LLM inference engine for Java

Native JVM WebAssembly runtime

Llama 3+ inference in pure Java

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

The Chemistry Development Kit

Automatically exported from code.google.com/p/figtree

Genome-scale protein function classification

Twitter-scale Mastodon implementation in 100x less code than Twitter wrote to build the equivalent

ROBOT is an OBO Tool

Jasmine: SV Merging Across Samples

R to Java interface

Simple test framework for Nextflow pipelines

MZmine 2 source code repository

Genome Pair Rapid Dotter

Open Source Protein REdesign for You v3

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

MOlecule fRagmenTAtion fRamework

Perception and labelling of stereogenic centres in chemical structures

A Java library for handling text and BinaryCIF files.

Supplements for hamap as sparql

Model Development Kit (MDK) - a library for managing metabolic information related to models. This code was created by members of the Cheminformatics and Metabolism group, EMBL-EBI