Correlation Analysis among the Various Inbreeding Coefficients of Pannon Ka Rabbits
Diversity, 2024
In a closed population with a limited population size, mating of related animals is unavoidable. ... more In a closed population with a limited population size, mating of related animals is unavoidable. In this study, the genealogy data of a synthetic maternal rabbit breed called Pannon Ka were used to calculate different inbreeding coefficients. The evaluated animals were born between 1995 and 2020, and the pedigree consisted of 5819 animals that originated from 4205 rabbit does and from 1314 rabbit bucks. The pedigree was further extended with 16,013 dummy progeny records in order to calculate litter inbreeding coefficients. Besides the conventional Wright inbreeding coefficients, the so-called ancestral and new inbreeding coefficients were also calculated using the gene dropping method. By the end of the evaluated period, the litter inbreeding increased to almost 11 and 60% for Wright and Ballou inbreeding, while the Kalinowski and the Kalinowski new inbreeding coefficients were 9.25 and 16.67%, respectively. Correlation coefficients were calculated for the does and for the litters. ...
An entry from the Cambridge Structural Database, the world's repository for small molecule cr... more An entry from the Cambridge Structural Database, the world's repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
Comparison of the exploratory behaviour of wild and laboratory mouse species
Behavioural processes, Apr 1, 2024
MOESM3 of Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation
Figshare, 2019
Additional file 3. Summary of selected 30 differentially expressed genes (DEGs) in S. europaea wi... more Additional file 3. Summary of selected 30 differentially expressed genes (DEGs) in S. europaea with their molecular function (MF) and biological processes (BP).
Additional file 4: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages
Figshare, 2015
Summary table of the number of R gene homologues identified at the R2 region. (XLSX 9 kb)
Additional file 13: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Major functional domains of differentially expressed proteins in 'Veyo' genotype of peren... more Major functional domains of differentially expressed proteins in 'Veyo' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 10 kb)
Additional file 12: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Major cellular compartments of differentially expressed transcripts in 'Falster' genotype... more Major cellular compartments of differentially expressed transcripts in 'Falster' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 12 kb)
Additional file 2: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
The transcripts classified into different clusters based on their expression patterns using K-mea... more The transcripts classified into different clusters based on their expression patterns using K-means clustering analysis of transcripts differentially expressed in 'Veyo' during cold acclimation. (XLSX 18 kb)
Additional file 2: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages
Figshare, 2015
Gene annotation of the R2 locus in potato ( S. tuberosum genotypes RH089-039-16, HB171(13), DM1-3... more Gene annotation of the R2 locus in potato ( S. tuberosum genotypes RH089-039-16, HB171(13), DM1-3 516R44) and tomato (S. lycopersicum cv. Heinz 1706). For each scaffold/BAC clone are indicated: linkage phase, genotype of affiliation, GenBank accession (where available), description of the product and EST accession (from the SolEST database). Manual annotation of DM0-3 516R44 and Tomato cv. Heinz were compared to the automated annotation and no relevant differences were identified. (XLSX 27 kb)
Additional file 3: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages
Figshare, 2015
Microsyntenic blocks between potato (RH-H0 haplotype) and tomato annotations. Microsyntenic prote... more Microsyntenic blocks between potato (RH-H0 haplotype) and tomato annotations. Microsyntenic proteins (same function, location and orientation) are lined up in the same row. Proteins shaded in grey are included in resistance clusters and cannot be directly compared because of fractioned synteny [45]. Putative transposable elements are shaded in red. Microsyintenic blocks are framed. (XLSX 15 kb)
Additional file 11: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Major cellular compartments of differentially expressed transcripts in 'Veyo' genotype of... more Major cellular compartments of differentially expressed transcripts in 'Veyo' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 11 kb)
MOESM2 of Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation
Figshare, 2019
Additional file 2. GO terms classification for the total sequences of S. europaea transcriptome. ... more Additional file 2. GO terms classification for the total sequences of S. europaea transcriptome. (a) cellular component (7348 GO terms), (b) biological processes (18,448 GO terms) and (c) molecular function (34,429 GO terms).
Additional file 4: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Differentially expressed transcripts in 'Veyo' genotype of perennial ryegrass ( Lolium pe... more Differentially expressed transcripts in 'Veyo' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation. (XLSX 289 kb)
MOESM4 of Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation
Figshare, 2019
Additional file 4. List of differentially expressed genes (DEG) obtained in this study. The gene ... more Additional file 4. List of differentially expressed genes (DEG) obtained in this study. The gene list [protein sequences of plant origin derived transcriptome (38,384 genes)] along with the description of their GO terms, functional annotations and closest match to plant species are given. The TPM (Transcript Per kilobase Million) values are the mean ± stdev for pooled replicates A and B (n = 2) for each variant of the experiment.
Additional file 5: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Differentially expressed transcripts in 'Falster' genotype of perennial ryegrass ( Lolium... more Differentially expressed transcripts in 'Falster' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation. (XLSX 375 kb)
Additional file 8: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Major biological processes of differentially expressed transcripts in 'Falster' genotype ... more Major biological processes of differentially expressed transcripts in 'Falster' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 14 kb)
Additional file 14: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Major functional domains of differentially expressed proteins in ‘Falster’ genotype of perennial ... more Major functional domains of differentially expressed proteins in ‘Falster’ genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 10 kb)
Additional file 5: of A disease resistance locus on potato and tomato chromosome 4 exhibits a conserved multipartite structure displaying different rates of evolution in different lineages
Figshare, 2015
Gene conversion events identified among R2GHs in RH, DM and HB, and among R2GHs in Solanum wild s... more Gene conversion events identified among R2GHs in RH, DM and HB, and among R2GHs in Solanum wild species. Gene conversions were visually identified or using the program Genconv [33]. A number was attributed to each event. For each gene conversion event are indicated details on the involved sequence pairs, position, size and Ď value. (XLSX 360 kb)
Additional file 15: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Differentially expressed fructan-related transcripts and other transcripts potentially involved i... more Differentially expressed fructan-related transcripts and other transcripts potentially involved in carbon flux diversion towards fructan biosynthesis during cold acclimation in perennial ryegrass ( Lolium perenne L.). (XLSX 20 kb)
Additional file 7: of Changes in Lolium perenne transcriptome during cold acclimation in two genotypes adapted to different climatic conditions
Figshare, 2015
Major biological processes of differentially expressed transcripts in 'Veyo' genotype of ... more Major biological processes of differentially expressed transcripts in 'Veyo' genotype of perennial ryegrass ( Lolium perenne L.) during cold acclimation identified by the DAVID tool. (XLSX 15 kb)
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