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APAlyzer gives zero/NaN matrix?
APAlyzer
2 days ago
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Testing subgroup-specific interactions in DEXSeq
DEXSeq
RNASeqData
Transcriptomics
29 days ago • updated 25 days ago
palanikumars2
• 0
1
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3
replies
535
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Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy names?
silva
decipher
DECIPHER
updated 25 days ago by
Erik Wright
▴ 160 • written 4 weeks ago by
Korneel
• 0
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0
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129
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How to start learning RNA sequence analysis with DESeq2
DESeq2
4 weeks ago
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mouse430a2.db
4 weeks ago
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soGGi error
soGGi
written 5 weeks ago by
Daniel
• 0
0
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1
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216
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Chip Seq Analysis of RNA Polymerase 2
ChIPseeker
ChIPSeqData
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written 5 weeks ago by
Gaurav
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PokeChill
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msmsTests, inconsistent sign between lFC.Av and LogFC
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339
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Changing multiple display parameters of a specific exon in GeneRegionTrack
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1
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Development of MSstat workflow to analyze DIA time series data
MSstats
updated 8 weeks ago by
Gordon Smyth
53k • written 8 weeks ago by
sithurandi
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0
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410
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MSstatsPTM
8 weeks ago
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245
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Junction CPM via Snapcount and Recount3
snapcount
recount3
written 8 weeks ago by
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1
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xcms
written 8 weeks ago by
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0
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11
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ComputationalChemistry
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updated 9 weeks ago by
shepherl
4.3k • written 9 weeks ago by
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2
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3
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705
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Guitar R package requires update due to dependency GenomicFeatures
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Guitar
txdbmaker
GenomicRanges
written 10 weeks ago by
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▴ 10
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5
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3.3k
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written 11 months ago by
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0
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0
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14
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ScreenR
3 months ago
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0
0
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1
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276
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PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
written 3 months ago by
bolusharris
• 0
0
votes
3
replies
438
views
DECIPHER DesignProbes unable to design FISH-probes
decipher
FISH
DECIPHER
FISH-probe
probe-design
written 3 months ago by
vreinmuth
• 0
3
votes
5
replies
695
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upstream git branches of bioc-release
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written 3 months ago by
Jeroen
▴ 10
0
votes
1
reply
578
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4
org.Ss.eg.db
AnnotationDbi
written 6 months ago by
Adam Munhall
• 0
0
votes
1
reply
462
views
GOseq Probability Weight Function bad fit
goseq
written 5 months ago by
francesca
• 0
0
votes
1
reply
314
views
[DESeq2] Changing dispersion estimates between runs of DESeq2
DESeq2
4 months ago • updated 4 weeks ago
colinmccornack
• 0
0
votes
3
replies
271
views
APAlyzer
APAlyzer
written 3 months ago by
anjanaram1
▴ 10
1,000 results • Page
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Answer: Is it still possible to do batch correction for my data?
by
Gordon Smyth
53k
I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…
Answer: specifying refColumn in calcNormFactors()
by
Gordon Smyth
53k
Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
Answer: Sex prediction in sesame for EPICV2
by
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Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
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by
dani.guan.3
• 0
Thank you, I appreciate your time and help.
Comment: Convergence Issues and Model Selection DESeq2
by
Michael Love
43k
> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…
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DiffBind dropping peaks in ATAC-seq data
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