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Analysis of neurodegenerative disease clinical trials

CLI tool for configuring and monitoring Claude Code

A repository containing code examples around MATSim

Yet another redundant workflow engine

A minimal, secure Python interpreter written in Rust for use by AI

Linear mixed model to fit polygenic GxE

A collection of commonly used formats for quick lookup.

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Map your keys for web surfing, expand your browser with javascript and keyboard.

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

Rapid standardisation and quality control of GWAS or QTL summary statistics

Knowledge Engine for AI Agent Memory in 6 lines of code

BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.

High accuracy RAG for answering questions from scientific documents with citations

Collapse variants into masks for burden testing.

A fast Rust based tool to serialize text-based files in a repository or directory for LLM consumption

A modular annotation tool for genomic variants

Implementation of Nougat Neural Optical Understanding for Academic Documents

Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, and CSV genotype formats.

A list of Free Software network services and web applications which can be hosted on your own servers

The AI framework that adds the engineering to prompt engineering (Python/TS/Ruby/Java/C#/Rust/Go compatible)

Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization