jonathanfischer97
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Catalyst.jl Public
Forked from SciML/Catalyst.jlChemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
Julia Other UpdatedMar 12, 2026 -
OscillatorOptimization Public
Julia package for optimizing oscillatory biological systems using Quality Diversity evolutionary algorithms
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juliadoc-mcp Public
MCP server for efficiently retrieving Julia docstrings and source code
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extensions Public
Forked from zed-industries/extensionsExtensions for the Zed editor
JavaScript UpdatedJul 31, 2025 -
ionerdss Public
Forked from JohnsonBiophysicsLab/ionerdssPython analysis and visualization tools for NERDSS
Jupyter Notebook GNU General Public License v3.0 UpdatedJul 24, 2025 -
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Optimization.jl Public
Forked from SciML/Optimization.jlMathematical Optimization in Julia. Local, global, gradient-based and derivative-free. Linear, Quadratic, Convex, Mixed-Integer, and Nonlinear Optimization in one simple, fast, and differentiable i…
Julia MIT License UpdatedJun 13, 2025 -
SciMLBenchmarks.jl Public
Forked from SciML/SciMLBenchmarks.jlScientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
MATLAB MIT License UpdatedJun 13, 2025 -
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BlackBoxOptimizationBenchmarking.jl Public
Forked from jonathanBieler/BlackBoxOptimizationBenchmarking.jlBlackBoxOptimizationBenchmarking
Julia Other UpdatedMay 22, 2025 -
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Evolutionary.jl Public
Forked from wildart/Evolutionary.jlEvolutionary & genetic algorithms for Julia
Julia Other UpdatedNov 14, 2024 -
InteractiveOscillator Public
Interactive sensitivity analysis of my biochemical oscillator model. Uses GLMakie to allow fast and reactive resolving and plotting of the ODE solutions.
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DynamicalSystems.jl Public
Forked from JuliaDynamics/DynamicalSystems.jlAward winning software library for nonlinear dynamics and nonlinear timeseries analysis
Julia Other UpdatedMay 26, 2024 -
OscTools Public
Tools for analyzing solutions to a model of a membrane-localization driven biological oscillator.
Julia MIT License UpdatedDec 6, 2023 -
OscillatorOptimizer-julia Public
Julia code for membrane-localization driven biochemical oscillator
Jupyter Notebook UpdatedDec 2, 2023 -
OscillatorOptimizer-python Public
For all my oscillation stuff
Jupyter Notebook UpdatedApr 11, 2023 -
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AnalysisOfViableParameterRegions Public
Forked from zigapusnik/AnalysisOfViableParameterRegionsPython UpdatedAug 14, 2019