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PerturbNet Public
Forked from cyclopenta/PerturbNetPerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
Python GNU General Public License v3.0 UpdatedMay 14, 2024 -
nat Public
Forked from natverse/natNeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
R UpdatedFeb 12, 2022 -
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BIRSBIO2020.scNMTseq.LIGER Public
BIRSBIO2020 workshop, scNMTseq data, LIGER analysis
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append Public
AppEnD tool for mapping 3’ additions from RNA-seq data. See details in Welch et al., RNA 2015: http://rnajournal.cshlp.org/content/21/7/1375.abstract
Perl UpdatedJan 5, 2021 -
whitePaper Public
Forked from BIRSBiointegration/whitePaperManubot for white paper
HTML Other UpdatedAug 31, 2020 -
bioinf602-603-fall2020 Public
Forked from dcmb-courses/bioinf602-603-fall2020Fall 2020 BIOINF List of Approved Papers
CSS UpdatedAug 27, 2020 -
scNMT Public
Validating Joint Analysis of Single-Cell Transcriptome and Epigenome Data Using scNMT-seq and SNARE-seq
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SnapTools Public
Forked from r3fang/SnapToolsA module for working with snap files in Python
Python Apache License 2.0 UpdatedApr 26, 2019 -
SLICER Public
SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0975-3
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KEMA Public
Forked from dtuia/KEMAcode and data for the paper `Kernel Manifold Alignment for domain adaptation'
MATLAB GNU General Public License v3.0 UpdatedAug 31, 2017 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellList of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedAug 24, 2017 -
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MATCHER Public
MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epigenomic data. See Welch et al. (2017) for more details: http…
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scoda Public
Forked from ahollocou/scodaA streaming algorithm for community detection algorithm in very large networks
C++ GNU General Public License v3.0 UpdatedMar 8, 2017 -
SingleSplice Public
Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: http://nar.oxfordjournals.org/content/early/2016/01/05/nar.gk…