Markers Inferred by Compacting Elements (mice). Synteny blocks from pangenomes.

Compacted and colored de Bruijn graph construction and querying

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

Compacted deBruijn graph in GFA to GFF format.

A tool for recovering synteny blocks from multiple alignment

Print genome sequences as paths in a compacted de Bruijn graph (GFA).

Generate any random de Bruijn sequence fast and efficiently

Pangenome openness from k-mers or genes

Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).

strange cross-platform, performance-oriented and interactive pangenome and large graph visualization

Evolution simulator with extinct lineages

A fun way to spice up your C code with a little German!