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    • .github

      Public
      0000Updated Feb 6, 2026Feb 6, 2026
    • Dockerfile
      MIT License
      0000Updated Nov 16, 2025Nov 16, 2025
    • Project to aid in managing repo versioning with gitflow
      Python
      0000Updated Dec 4, 2024Dec 4, 2024
    • gpas-user-tools

      Public archive
      Collection of tools to help users upload, process and
      Python
      MIT License
      0100Updated Nov 27, 2024Nov 27, 2024
    • Delete all OCI resources in a compartment
      Python
      Universal Permissive License v1.0
      50000Updated Jun 17, 2024Jun 17, 2024
    • Read contamination removal
      C
      MIT License
      32501Updated Jan 24, 2024Jan 24, 2024
    • gpas-cli

      Public archive
      The CLI client for GPAS SC2
      Python
      Other
      25260Updated Nov 18, 2023Nov 18, 2023
    • sp3-oci-rm

      Public archive
      Resource Manager Stack and Deployment Scripts for building SP3 cluster on OCI
      HCL
      4000Updated Mar 22, 2023Mar 22, 2023
    • Create perfect FASTQ files for the SARS-CoV-2 WHO lineages for use in testing
      Python
      MIT License
      0100Updated Mar 20, 2023Mar 20, 2023
    • gpas-uploader

      Public archive
      Sequencing data upload client for GPAS users
      Python
      BSD 3-Clause "New" or "Revised" License
      0130Updated Jun 23, 2022Jun 23, 2022
    • Shell
      0000Updated Jun 14, 2022Jun 14, 2022
    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      Apache License 2.0
      780000Updated Apr 6, 2022Apr 6, 2022
    • Python script that checks the Tags and collectionDate are correct in an upload CSV file
      Python
      MIT License
      0000Updated Mar 9, 2022Mar 9, 2022
    • Python
      MIT License
      6000Updated Mar 3, 2022Mar 3, 2022
    • A series of SARS-CoV-2 development testsets for the different pipelines available in GPAS
      Jupyter Notebook
      2110Updated Mar 1, 2022Mar 1, 2022
    • catsgo

      Public
      Command client of SP3 for fetch, run and download.
      Python
      MIT License
      2000Updated Dec 14, 2021Dec 14, 2021
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