Repositories list

• ygc-blog

  Public
  Guangchuang Yu's Blog

  TypeScript

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• ggai

  Public
  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• aisdk

  Public
  🤖 A production-grade framework for building AI-powered applications in R.

  R

  •

  Other

  •44 forks•3030 stars•11 issue•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• enrichit

  Public
  C++ Implementations of Functional Enrichment Analysis

  C++

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• biomedical-knowledge-mining-book

  Public
  :book: Biomedical knowledge mining using GOSemSim and clusterProfiler

  gene-ontologysemantic-similaritydisease-ontology+ 4

  gene-ontologysemantic-similaritydisease-ontologymedical-subject-headingsenrichment-analysisgosemsimclusterprofiler

  TeX

  •3030 forks•9090 stars•2020 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• DOSE

  Public
  :mask: Disease Ontology Semantic and Enrichment analysis

  semantic-similaritydisease-ontologyenrichment-analysis

  semantic-similaritydisease-ontologyenrichment-analysis

  R

  •3434 forks•125125 stars•2222 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• treedata-book-2ed

  Public
  :book: Data Integration, Manipulation and Visualization of Phylogenetic Trees

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• clusterProfiler

  Public
  :bar_chart: A universal enrichment tool for interpreting omics data

  visualizationgorstats+ 3

  visualizationgorstatskeggenrichment-analysisgsea

  R

  •266266 forks•1.2k1.2k stars•365365 issues•00 pull requests•Updated Apr 5, 2026Apr 5, 2026

• TCMDATA

  Public
  Traditional Chinese Medicine Data Analysis and Visualization

  R

  •33 forks•1111 stars•00 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• edify

  Public
  Lesson-First AI Learning Runtime for R

  R

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  Other

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• MicrobiotaProcess

  Public
  :microbe: A comprehensive R package for deep mining microbiome

  rstatsmicrobiomemicrobiome-analysis+ 1

  rstatsmicrobiomemicrobiome-analysismicrobiome-data

  R

  •3737 forks•191191 stars•9393 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• enrichplot

  Public
  Visualization of Functional Enrichment Result

  visualizationpathway-analysisenrichment-analysis

  visualizationpathway-analysisenrichment-analysis

  R

  •7575 forks•257257 stars•121121 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• yulab.utils

  Public
  Miscellaneous functions commonly used by 'YuLab-SMU'.

  R

  •1010 forks•3838 stars•00 issues•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• ggtree

  Public
  :christmas_tree:Visualization and annotation of phylogenetic trees

  visualizationggplot2r+ 2

  visualizationggplot2rannotationsphylogenetic-trees

  R

  •184184 forks•922922 stars•192192 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• ggbreak

  Public
  :broken_heart: An implementation of scale functions for setting axis breaks of a 'gg' plot.

  ggplot2axis-breakwrap-plot+ 2

  ggplot2axis-breakwrap-plotcut-plotggbreak

  R

  •77 forks•146146 stars•3535 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• yulab-smu.github.io

  Public
  :house: Homepage for YuLab-SMU

  HTML

  •55 forks•1414 stars•00 issues•00 pull requests•Updated Mar 6, 2026Mar 6, 2026

• epiSeeker

  Public
  epiSeeker: an R package for Annotation, Comparison and Visualization of multi-omics epigenetic data

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• Icare

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• scholar

  Public
  Analyse citation data from Google Scholar

  R

  •

  Other

  •8080 forks•5050 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• ivolcano

  Public
  Interactive Volcano Plot

  R

  •11 fork•77 stars•00 issues•00 pull requests•Updated Feb 15, 2026Feb 15, 2026

• fanyi

  Public
  Translate Words or Sentences via Online Translators

  R

  •88 forks•6060 stars•99 issues•00 pull requests•Updated Feb 14, 2026Feb 14, 2026

• sclet

  Public
  A Lightweight Toolkit for Single-Cell Data Analysis

  R

  •77 forks•88 stars•00 issues•11 pull request•Updated Feb 12, 2026Feb 12, 2026

• clusterProfiler-LLM-Supplementary

  Public
  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• seqmagick

  Public
  sequence manipulation

  R

  •22 forks•66 stars•00 issues•00 pull requests•Updated Jan 31, 2026Jan 31, 2026

• plotbb

  Public
  :paintbrush: Grammar of Graphics for base plot

  R

  •77 forks•5252 stars•11 issue•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• createKEGGdb

  Public
  Create KEGG.db Package

  R

  •1919 forks•6464 stars•77 issues•00 pull requests•Updated Jan 29, 2026Jan 29, 2026

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 21, 2026Jan 21, 2026

• tigeR

  Public
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

  R

  •1010 forks•5454 stars•44 issues•00 pull requests•Updated Jan 21, 2026Jan 21, 2026

• GOSemSim

  Public
  :golf: GO-terms Semantic Similarity Measures

  bioinformaticsgene-ontologysemantic-similarity

  bioinformaticsgene-ontologysemantic-similarity

  R

  •2424 forks•6969 stars•1414 issues•00 pull requests•Updated Jan 20, 2026Jan 20, 2026

• ggiraphExtra

  Public
  Extra Interactive Features for 'ggiraph'

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026