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@rat-genome-database

Rat Genome Database

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  1. rgd-core-library rgd-core-library Public

    Domain layer and shared components

    Java

  2. rgd-web-application rgd-web-application Public

    Code used by the RGD web site and tools

    JavaScript 2

  3. rgd-web-services rgd-web-services Public

    Swagger implementation

    Java

  4. rgd-annotation-files rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

Repositories

Showing 10 of 154 repositories
  • omia-pipeline Public

    Create annotations from OMIA

    rat-genome-database/omia-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Apr 6, 2026
  • go-rat-annotation-pipeline Public

    Imports GO annotation for rat from EBI

    rat-genome-database/go-rat-annotation-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Apr 6, 2026
  • rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

    rat-genome-database/rgd-annotation-files’s past year of commit activity
    0 GPL-3.0 0 1 0 Updated Apr 4, 2026
  • rgd-web-application Public

    Code used by the RGD web site and tools

    rat-genome-database/rgd-web-application’s past year of commit activity
    JavaScript 2 GPL-3.0 0 0 2 Updated Apr 3, 2026
  • rgd-ai-chatbot Public

    A Spring Boot application using OpenAI embeddings and PostgreSQL vector store for efficient document retrieval and question answering through RAG (Retrieval Augmented Generation). Enables document uploads, semantic search, and context-aware responses.

    rat-genome-database/rgd-ai-chatbot’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Apr 3, 2026
  • rgd-core-library Public

    Domain layer and shared components

    rat-genome-database/rgd-core-library’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Apr 3, 2026
  • nomenclature-pipeline Public
    rat-genome-database/nomenclature-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 30, 2026
  • gff3-pipeline Public

    Creates gff3 files to be loaded into RGD JBrowse instance.

    rat-genome-database/gff3-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 30, 2026
  • variant-load-pipeline Public

    Load rat strain data from VCF files into RGD database and precomputes data for use by Variant Visualizer tool

    rat-genome-database/variant-load-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 30, 2026
  • mouse-disease-annotation-pipeline Public

    Import disease annotations from MGI.

    rat-genome-database/mouse-disease-annotation-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Mar 27, 2026
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