rrwick
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Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Electronic Valve Instrument – MIDI controller based on the Teensy 3.2
Visualization tool for (meta)genome assembly graphs
A data specification for harmonizing microbial typing contextual data. The specification provides standardized (ontology-based) fields and terms which can be implemented in tooling, with supporting…
De novo genome assembly for long reads using an overlap graph
Rapid & standardized genome annotation using protein structural information
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
C++ Audio Plug-in Framework for desktop, mobile, xr and web
PBSIM3: a simulator for all types of PacBio and ONT long reads
Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses
Extremely fast and accurate Nanopore demultiplexing
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.
Identification and classification of homopolymeric tracts from reads.
Taxonomic Classification of Bacteria and Archaea Genomes
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
Download alleles and profiles from PubMLST and BIGSdb Pasteur
🛠️🧬 A Software Framework to Manipulate Assembly Graphs
A repository for collecting GPU basecalling stats
A new high-resolution long-read metagenome assembler for even noisy reads
Rust bindings to minimap2 library
Basecalling configuration prediction through FASTQ files
Plasmid analysis using rearrangement distances
Quickly generate consensus assemblies for bacterial genomes
Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.