fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Randomly subsample sequencing reads or alignments

Package for fetching metadata and downloading data from SRA/ENA/GEO

BigWig and BAM utilities

deploy a snakemake pipeline directly from version control (under development)

A high-performance BigWig and BigBed library in Rust

A read extraction and realignment tool for next generation sequencing data

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

An efficient way to guess the library type of your RNA-Seq data.

Useful bash one-liners for bioinformatics.

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

A Rust-Based suite of utilities for ultra-fast genomic feature extraction

an API for intersections of genomic data

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

Creating alignment plots from bam files

Extract junction reads from bulk/single-cell RNA-seq data

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Utility CLI for handling GFF files (incl. converting to parquet)

Efficient querying of biological databases