SamBryce-Smith
Follow
Lists (11)
Starred repositories
MAS-Iso-Seq Isoform Identification and Quantification
Discover differential transcript usage from polyA-captured single cell RNA-seq data
Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.
from vibe coding to agentic engineering - practice makes claude perfect
A ~9M parameter LLM that talks like a small fish.
Fast genomics quality control tools for sequencing data, written in Rust.
scikit-learn: machine learning in Python
Nextflow pipeline for converting images to OME-Zarr using bioformats2raw
Beginner, advanced, expert level Rust training material
Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing
Fyn is a fork of uv for fast Python package management, dependency resolution, virtual environments, and pyproject.toml workflows.
Great Docs lets you easily build a Python package docs site
CLI proxy that reduces LLM token consumption by 60-90% on common dev commands. Single Rust binary, zero dependencies
An awesome tool to visualize snakemake rule graphs
Documentation that simply works
pixi-to-conda-lock converts a pixi.lock file to a conda-lock.yml file
This repository is dedicated to the update of PolyASite Atlas to v4.0 with cell-type-level quantification of PAS usage
Utility CLI for handling GFF files (incl. converting to parquet)
🌿🫐 Bramble: project spliced genomic alignments into transcriptomic space
🪐 Markdown with superpowers: from ideas to papers, presentations, websites, books, and knowledge bases.
Tested prompts for using LLMs in life science research. Every prompt includes failure modes, verification requirements, and real test results. For researchers who want reliable, reproducible LLM wo…
5
Updated Feb 4, 2026
Command-line toolkit for Gene Ontology (GO) enrichment analysis
decision tree that scores splice-sites and TSS/TESs based on coverage
