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EMBL's European Bioinformatics Institute (EMBL-EBI)
- Cambridge (UK)
- https://www.linkedin.com/in/vrbouza/
- https://orcid.org/0000-0002-7225-7310
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simd-sketch Public
Forked from RagnarGrootKoerkamp/simd-sketchCompute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
Rust UpdatedApr 15, 2026 -
bacpop-website Public
Forked from bacpop/bacpop-websiteCode for group website
HTML Apache License 2.0 UpdatedApr 13, 2026 -
ska.rust Public
Forked from bacpop/ska.rustSplit k-mer analysis – version 2
Rust Apache License 2.0 UpdatedMar 25, 2026 -
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amule Public
Forked from amule-project/amule'All-platform' P2P client based on eMule
C++ UpdatedMar 22, 2026 -
orphos Public
Forked from FullHuman/orphosFast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes
Rust GNU General Public License v3.0 UpdatedMar 19, 2026 -
pangenome-sqlite-enricher Public
A Gephi plugin that attaches metadata from a companion SQLite database to an already-loaded pangenome graph, mostly vibe coded.
Java UpdatedMar 18, 2026 -
sketchlib.rust Public
Forked from bacpop/sketchlib.rustRust reimplementation of pp-sketchlib
Rust Apache License 2.0 UpdatedFeb 27, 2026 -
deacon Public
Forked from bede/deaconFast DNA search and [host] depletion using minimizers
Rust MIT License UpdatedFeb 26, 2026 -
BrimView Public
Forked from prevedel-lab/BrimViewA web-based brim (Brillouin Image) viewer and analyzer
Python GNU Lesser General Public License v3.0 UpdatedFeb 25, 2026 -
gpufit-wgpu Public
Port of Gpufit from C++ and CUDA to Python and WebGPU, mostly vibe coded as part of 2026 BIOMICS Hackathon
Python UpdatedFeb 25, 2026 -
pangenome_merge Public
Forked from qtoussaint/pangenome_mergePython MIT License UpdatedFeb 6, 2026 -
alphafold Public
Forked from google-deepmind/alphafoldOpen source code for AlphaFold 2.
Python Apache License 2.0 UpdatedDec 4, 2025 -
ggCaller_manuscript Public
Forked from samhorsfield96/ggCaller_manuscriptRepository of scripts used in ggCaller manuscript.
Python MIT License UpdatedSep 4, 2025 -
wasm-bindgen Public
Forked from wasm-bindgen/wasm-bindgenFacilitating high-level interactions between Wasm modules and JavaScript
Rust Apache License 2.0 UpdatedAug 14, 2025 -
wasm-pack Public
Forked from wasm-bindgen/wasm-pack📦✨ your favorite rust -> wasm workflow tool!
Rust Apache License 2.0 UpdatedAug 4, 2025 -
walrus Public
Forked from wasm-bindgen/walrusWalrus is a WebAssembly transformation library 🌊🐘
Rust Apache License 2.0 UpdatedDec 11, 2024 -
weedle Public
Forked from wasm-bindgen/weedleA WebIDL Parser
WebIDL MIT License UpdatedJul 8, 2024 -
pp-sketchlib Public
Forked from bacpop/pp-sketchlibLibrary of sketching functions used by PopPUNK
C++ Apache License 2.0 UpdatedApr 15, 2024 -
esm Public
Forked from facebookresearch/esmEvolutionary Scale Modeling (esm): Pretrained language models for proteins
Python MIT License UpdatedFeb 7, 2024 -
Prodigal Public
Forked from hyattpd/ProdigalProdigal Gene Prediction Software
C GNU General Public License v3.0 UpdatedJan 23, 2024 -
genproductions Public
Forked from cms-sw/genproductionsGenerator fragments for MC production
Python UpdatedJan 16, 2023 -
console_error_panic_hook Public
Forked from rustwasm/console_error_panic_hookA panic hook for wasm32-unknown-unknown that logs panics with console.error
Rust Apache License 2.0 UpdatedDec 4, 2022 -
nbody-wasm-sim Public
Forked from nuzzles/nbody-wasm-simAn N-body WebAssembly simulation using Web GPU
Rust UpdatedDec 1, 2022 -
cmgtools-lite Public
Forked from uniovi-hepex/cmgtools-liteCMGTools as a subsystem, not as a CMSSW overlay
Python UpdatedOct 28, 2022 -
nanoAOD-tools Public
Forked from uniovi-hepex/nanoAOD-toolsTools for working with NanoAOD (requiring only python + root, not CMSSW)
Python UpdatedOct 26, 2022 -
Covid-19-Detection Public
Forked from dakshtrehan/Covid-19-DetectionThe aim of this project is to help medical practitioners in a practical way to combat the pandemic.
Jupyter Notebook UpdatedApr 17, 2021 -
jupyterhub-docker Public
Forked from defeo/jupyterhub-dockerA configuration for a JupyterHub+DockerSpawner+CASAuthenticator server with Traefik proxy, based on docker-compose
Python MIT License UpdatedApr 6, 2021 -
notebook-image Public
Forked from swan-cern/notebook-imageDocker file for a Jupyter notebook installation
Dockerfile GNU Affero General Public License v3.0 UpdatedMar 3, 2021 -
DTSliceTestOfflineAnalysis Public
Forked from battibass/DTSliceTestOfflineAnalysisPackage collecting the offline analysis program for the DT slice-test
C UpdatedDec 8, 2020

