Search Results for "x-ray diffraction"
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Showing 44 open source projects for "x-ray diffraction"
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MuscleX
Diffraction X-ray Image Analyzing Tool Kit
The Muscle X Application Suite is a collection of programs intended to assist with analyzing diffraction X-ray images. -
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XD1DD
XD1DD: X-ray Diffraction for 1 Dimensional Disorder
The computer program is designed to calculate powder X-ray diffraction patterns for one-dimensionally (1D) disordered crystals, i.e. containing planar defects. Calculations are made on the basis of statistical models, where the Markov chain with stationary transition probabilities is used as a probabilistic rule for generating a 1D disordered sequence of layers. The model takes into account the short-range order in the alternation and methods of layer superposition, which allows simulating various cases of distribution of planar defects in crystals. ... -
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xrayutilities
a package with useful scripts for X-ray diffraction physicists
xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). ... -
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GenX
X-Ray and Neutron Reflectivity Modeling
GenX is a scientific program to refine x-ray refelcetivity, neutron reflectivity and surface x-ray diffraction data using the differential evolution algorithm. GenX is very modular and highly extensible and can be used as a general fitting program. -
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QXRD is software for the acquisition and analysis of X-ray data taken with 2 dimensional detectors. The software can drive a Perkin Elmer XRD series flat panel detector and can be remote-controlled via a socket interface, or directly from SPEC
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MCE - Marching Cube ELD
Crystallographic software for displaying voxel maps - electron density
MCE is an crystallographic experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. Download the installation file (default download) or find in "Files" the zip-file with instant copy of the program which does not require the installation. -
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Object-oriented crystallographic library and program, for the analysis of Crystal structures from scattering experiments: optimized scattering computation, Graphical interface for structures and data, global optimization algorithms.
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PROPER Optical Propagation Library
Routines for wavefront propagation in IDL, Matlab, and Python
PROPER is a library of routines for the propagation of wavefronts through an optical system using Fourier-based methods. It was developed at the Jet Propulsion Laboratory for modeling stellar coronagraphs, but it can be applied to other optical systems were diffraction propagation is of concern. It is currently available for IDL (Interactive Data Language), Matlab and Python (3.x). It includes routines for generating complex apertures and obscurations and aberrations (Zernike & PSD-defined). It includes a model of a deformable mirror for wavefront control. The routines perform near and far field propagation with automatic selection of propagators. ... -
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DiDaCo
DiDaCo (Diffraction Data Converter)
Features: • Change the wavelength of X-rays • Sum the points by increasing the step • Extract bar charts from .xml PDF4+ cards For ran: unzip the archive and run DiDaCo.exe Required: • Windows 7 or newer • Microsoft .NET Framework 4: www.microsoft.com/en-US/download/details.aspx?id=17851 (Web Installer, 1 Mb) www.microsoft.com/en-us/download/details.aspx?id=17718 (Standalone Installer, 48 Mb) • Microsoft Visual C++ Redistributable: ... -
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atomes
Analysis, visualization, edition of 3D atomistic models
atomes is a Free (Open Source) cross-platform software licensed under the terms of the Affero GPL v3+ license. atomes is a toolbox developed to analyze, to visualize and to create/edit three-dimensional atomistic models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le... -
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ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data.
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DIANNA
software for DFA method
DIANNA (Diffraction Analysis of Nanopowders) is a free software developed to simulate atomic models of structures from an ensemble of nanoparticles and to calculate their whole X-ray powder diffraction patterns and the radial distribution function. The main objects of investigation are the particles whose coherent scattering domains do not exceed several nm. -
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XRD CUBIC
Simulate crystal cell length (a), Miller indices {h, k, l}, d-spacing
This is a basic computer program (coded in Python) to simulate possible unit crystal cell length (a), Miller indices - {h, k, l} and interplanar spacing (d) for cubic crystals from observed (experimental) X-ray diffraction (XRD) angle, 2-theta. It can simulate all these possible crystal lattice parameters for cubic crystal systems between the given 2–theta values within the range of specified cell length (a) limits. 1. Enter wavelength of X-ray (in Angstroms) 2. Enter minimum and maximum diffraction angle as 2-theta (in Degrees) 3. ... -
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DiPoly
Diffraction analysis of Polymers
DiPoly is a new software that implements basic diffraction methods for the structural characterization of biopolymers. It is freeware with a friendly interface for the analysis of experimental powder X-ray diffractograms of polymer samples of biomass of various origins. A complex approach approach based on a combination of the Segal, decomposition and LeBale methods is used to estimate the degree of crystallinity. -
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DoNa
Domain Nanostructure
...The program allows you to quickly create, modify and analyze complex models of nanostructures. The software is now integrated into program DiAnNa (https://sourceforge.net/projects/dianna) for calculating powder X-ray diffraction. -
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Crystalsim - XRD hkl simulation
X-ray diffraction (XRD) analysis for hkl simulation of any crystal.
Crystalsim is a simple freeware program with a neat graphical user interface for X-ray diffraction (XRD) data analysis . It can simulates all possible {hkl} planes data for the selected crystal. Crystallographic Information File (.cif) can also be used. Analyze both powder diffraction and single crystal data . Indexed at International Union of Crystallography (IUCR). Crystalline lattice parameters such as ‘a’, ‘b’, ‘c’ as well as interfacial angles such as alpha, beta, gamma can also be entered manually. ... -
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LIPRAS, Peak Fitting Software
Peak fitting diffraction data
LIPRAS v466 LIPRAS [LEEP-ruhs], short for Line-Profile Analysis Software, is a graphical user interface for least-squares fitting of Bragg peaks in powder diffraction data. For any region of the inputted data, user can choose which profile functions to apply to the fit, constrain profile functions, and view the resulting fit in terms of the profile functions chosen. If you use LIPRAS for your research, please cite it: Giovanni Esteves, Klarissa Ramos, Chris M. Fancher, and Jacob L.... -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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The purpose of this program is to calculate the phase transformation crystallography after a phase transformation and represent the results in graphical way such as in stereo graphic projection.The most recent crystallographic theories for both martensite and diffusional transformation are included.The variant selection during phase transformation could also be analyzed. The lattice matching near the interface, the superimposed diffraction patterns and so on can be readily simulated with present program. It supports Windows, Linux, Mac OS. PTCLab 支持相变晶体学计算（包括马氏体相变晶体学，扩散型相变的相变晶体学），衍射斑模拟与标定，变体分析，极射投影图，Wulff网。支持主流操作系统。 Researchgate ID: https://www.researchgate.net/profile/Xinfu_Gu2 If you used PTCLab in your work, please cite: Gu, X.-F., Furuhara, T. & Zhang, W....
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POWAINDv1.0
Protein Water Interactions Determination, version 1.0
...Disordered shell-water may occupy central hydrophobic-cavity of protein. While X-ray diffraction can detect the former, the latter is suitably detected by NMR method. In this context, the question as to how to gain insight into these shell-water and protein interactions has been highly relevant. In this end, POWAINDv1.0 has been a program that extracts detailed analytical information on interactions a] between shell-water and protein-atom/ residue groups and b] among multiple atoms (bridge interactions) of water with an atom/residue of a protein or vice-versa. -
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XDSGUI
A GUI for xds, with viewing cbf, editing xds.inp etc.
xds-gui is a fork from xds-viewer, which aims on expanding it to a full graphical interface for xds. XDS stands for X-ray Detector Software for processing single-crystal monochromatic diffraction data. xds-viewer was originally developed by Michael Hoffer until 2008 under the GPL. xds-gui is now being developed by me, Wolfgang Brehm under administration of Kay Diederichs at the University of Konstanz under the GPL. -
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2DFLT
Program for Normalization, Averaging and Editing of In Situ Data Sets
...source=directory). 2DFLT specifically was written to target in situ X-ray Powder Diffraction data from synchrotron measurements. Hence it can read CHI, XYE (TOPAS), FXYE(GSAS/ GSASII) and XY- files formats. However it can read general in situ data written into individual TXT or XY – files. -
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DIALS
Diffraction Integration for Advanced Light Sources
DIALS is a software toolkit for the analysis of X-ray diffraction data. It is principally focused on integrating macromolecular crystallography data recorded at synchrotrons and free electron lasers and aims to achieve this within a unified programming framework. DIALS is a collaboration between Diamond Light Source, CCP4, MRC LMB in Cambridge and developers at the Lawrence Berkley National Laboratory in California.
